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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa02LNT0474800.1

TTAATATGATGAACTAGAAATTAATTATTTTTTAATTATTTTTAAAAGATTATTTTTGAAATATATATTATTTTACTTAAAAATCTAGCTCGGTAGTCGAGCTCGAGCTTGGTCGAGCTCGAGCCGAGCCTGTCAAAAAGCTCGAACATTTTATAGGCTCGGCTCGAGCTTGTATCGAGCTTGTATCGAGCTCGAGCCTAGGCAGATGAGCTCGGCTCGTTGAA

Coding Potentia
Explanation CPC Score
noncoding -1.17457
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0474800.1 osa-miR2122 Cleavage 1.5 11.247 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0474800.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0474800.1 2 Gw2 Morphological trait Seed nan nan
Osa02LNT0474800.1 2 qMXA-2-1 Morphological trait Root OSR9A RM71
Osa02LNT0474800.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0474800.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
Osa02LNT0474800.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0474800.1 2 qEML-2 Morphological trait Seed R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus