Transcript

Sequence

>Osa05LNT0512600.1

CGGTGTGGAAGCCACAAAAATGATAGACATATGTACTTCGGTGCCCCTGGTGCAGCTTGCGTCTCCAAGCTCGTCATGGTCATCGACGTGCAGCCCCTGCCCCTGCTCCTAACACAACATCTACCTCATCCGTCTCCACACGACGAGCTCAAGCATCGCCTCCATGAGACCATGATGACCAGAGCAATGATCAGTAGTCGGTCTAAGAGGACGATCAGCTACACTGAGACTGAAACACGACCCAGACTCCTACGGGAAGTAGCAGTGGGAAATTTTCCGCAATGAGAGAAAGCCTGATGGAGCAATGCCG

Coding Potentia

Explanation	CPC Score
noncoding	-1.08536

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa05LNT0512600.1	osa-miR5516b	Cleavage	5.0	14.57	1	21
Osa05LNT0512600.1	osa-miR5516a	Cleavage	5.0	14.57	1	21

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus
Osa05LNT0512600.1	5	4807229	Grain-Width(mm)	11.4105072	+
Osa05LNT0512600.1	5	4807237	Grain-Width(mm)	11.68777847	+
Osa05LNT0512600.1	5	4807252	Grain-Width(mm)	11.0348959	+
Osa05LNT0512600.1	5	4807267	Grain-Width(mm)	11.86457539	+
Osa05LNT0512600.1	5	4807273	Grain-Width(mm)	10.95685673	+
Osa05LNT0512600.1	5	4807301	Grain-Width(mm)	9.859585762	+
Osa05LNT0512600.1	5	4807375	Grain-Width(mm)	11.72819901	+
Osa05LNT0512600.1	5	4807389	Grain-Width(mm)	11.39680004	+
Osa05LNT0512600.1	5	4807394	Grain-Width(mm)	12.98029518	+
Osa05LNT0512600.1	5	4807395	Grain-Width(mm)	12.25883389	+
Osa05LNT0512600.1	5	4807401	Grain-Width(mm)	10.79802322	+
Osa05LNT0512600.1	5	4807411	Grain-Width(mm)	11.47543621	+
Osa05LNT0512600.1	5	4807438	Grain-Width(mm)	11.42485142	+
Osa05LNT0512600.1	5	4807439	Grain-Width(mm)	11.40768909	+
Osa05LNT0512600.1	5	4807470	Grain-Width(mm)	10.20156479	+
Osa05LNT0512600.1	5	4807472	Grain-Width(mm)	9.815276146	+
Osa05LNT0512600.1	5	4807491	Grain-Width(mm)	9.696382523	+
Osa05LNT0512600.1	5	4807497	Grain-Width(mm)	8.75353241	+
Osa05LNT0512600.1	5	4807499	Grain-Width(mm)	9.151126862	+
Osa05LNT0512600.1	5	4807510	Grain-Width(mm)	10.7165556	+