Transcript

Sequence

>Osa02LNT0475100.1

AAAGTCATATAGAAAAATAAAAACAACAAAAGTTATAGATCTTGATAAGTTATACAACTTTGTTGTTGACAACTTTTCCATTTGAAATCATTTACTACCCAAAAAATTATTTGAATTGCTTATATTTTTAAATCTCAAATTTTATATAGTTCAATCAAACTCGGATGGAGAAATGACCAAAATAAAATTGGTAGATCTCAACGAGTTCTACAACTTTGTTTTTGGTAACTTTTTCATATGAGTTC

Coding Potentia

Explanation	CPC Score
noncoding	-1.08931

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0475100.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0475100.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0475100.1	2	qLRS-2	Resistance or Tolerance	Drought tolerance	RM322	RM324
Osa02LNT0475100.1	2	qMXA-2-1	Morphological trait	Root	OSR9A	RM71
Osa02LNT0475100.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0475100.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus