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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0462900.1

CCATCCGTCCCAAAATAAGCACAACTATGAGTTTCCGTGTCCAACTTTGATCGTTCATCTTAATTAATTTTTTTTTAAAAAAAAATAAAAAACATAATTTACACATAAAGTACTATTCATGTTTTATAATCTTACAACAACAAAAATACTAATAAAAAAATTAAATAAGATGTACGATCAAAATTGGATACTGAAACTAATGGCTGTACTTATTTTGGAACTGGG

Coding Potentia
Explanation CPC Score
noncoding -1.20271
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0462900.1 osa-miR812p Cleavage 2.5 7.871 1 24
Osa03LNT0462900.1 osa-miR812s Translation 5.0 8.279 1 24
Osa03LNT0462900.1 osa-miR5799 Translation 5.0 8.279 1 24
Osa03LNT0462900.1 osa-miR812t Cleavage 4.5 6.903 1 24
Osa03LNT0462900.1 osa-miR812u Cleavage 4.5 6.903 1 24
Osa03LNT0462900.1 osa-miR812a Cleavage 5.0 7.871 1 22
Osa03LNT0462900.1 osa-miR812b Cleavage 5.0 7.871 1 22
Osa03LNT0462900.1 osa-miR812c Cleavage 5.0 7.871 1 22
Osa03LNT0462900.1 osa-miR812d Cleavage 5.0 7.871 1 22
Osa03LNT0462900.1 osa-miR812e Cleavage 5.0 7.871 1 22
Osa03LNT0462900.1 osa-miR812f Cleavage 3.0 7.387 1 24
Osa03LNT0462900.1 osa-miR1862e Cleavage 4.5 6.671 1 24
Osa03LNT0462900.1 osa-miR812g Cleavage 3.0 8.279 1 24
Osa03LNT0462900.1 osa-miR812h Cleavage 3.0 8.279 1 24
Osa03LNT0462900.1 osa-miR812i Cleavage 3.0 8.279 1 24
Osa03LNT0462900.1 osa-miR812j Cleavage 3.0 8.279 1 24
Osa03LNT0462900.1 osa-miR812k Cleavage 2.5 7.387 1 24
Osa03LNT0462900.1 osa-miR812l Cleavage 2.5 7.387 1 24
Osa03LNT0462900.1 osa-miR812m Cleavage 2.5 7.387 1 24
Osa03LNT0462900.1 osa-miR812n-5p Cleavage 1.5 11.098 1 24
Osa03LNT0462900.1 osa-miR812n-3p Cleavage 4.5 6.903 1 24
Osa03LNT0462900.1 osa-miR812o-3p Cleavage 3.5 6.619 1 24
Osa03LNT0462900.1 osa-miR5505 Cleavage 5.0 10.048 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0462900.1 3 rn3 Resistance or Tolerance Drought tolerance RM231 RM175
Osa03LNT0462900.1 3 qDEF-3 Physiological trait Flowering R518 C721
Osa03LNT0462900.1 3 QSbr3a Resistance or Tolerance Sheath blight resistance RG348 RG944
Osa03LNT0462900.1 3 qtl3.1 Resistance or Tolerance Drought tolerance RM7332 RM545
Osa03LNT0462900.1 3 QSs3 Physiological trait Sterility RG348 RG944
Osa03LNT0462900.1 3 dth3.1 Resistance or Tolerance Drought tolerance RG104 RZ329
Osa03LNT0462900.1 3 nan Resistance or Tolerance Drought tolerance RG348 RZ329
Osa03LNT0462900.1 3 nan Resistance or Tolerance Drought tolerance RM231 RZ329
Osa03LNT0462900.1 3 nan Resistance or Tolerance Drought tolerance RM231 RZ329
Osa03LNT0462900.1 3 nan Resistance or Tolerance Drought tolerance RM231 RZ329
Osa03LNT0462900.1 3 qFDN-3 Physiological trait Flowering RZ329 RG348
Osa03LNT0462900.1 3 nan Morphological trait Root CDO20 RG409
Osa03LNT0462900.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0462900.1 3 qHEJ-3 Morphological trait Shoot/Seedling RM175 RM22
Osa03LNT0462900.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0462900.1 3 qTA3 Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus