>Osa04LNT0495900.1

AATATTTGACGCTGTTAACTTTTTATCACATGTTTGATCGTTCGTCTTATTCAAAAAATTTAAGTAATTATTAATTCTTTTCCTATCATTTGATTCATTGTTAAATATATTTTTATGTAGGCATATAATTTTATATATCTCATAAAAGTTTTTGAATAAGACGAACGGTCAAACATGTGCTAAAAAGTCAATAGTGTCAAACATT

Explanation	CPC Score
noncoding	-1.30729

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0495900.1	osa-miR812s	Translation	2.0	6.35	1	24
Osa04LNT0495900.1	osa-miR5799	Translation	2.0	6.35	1	24
Osa04LNT0495900.1	osa-miR5824	Cleavage	5.0	8.638	1	24
Osa04LNT0495900.1	osa-miR812a	Cleavage	4.0	8.418	1	22
Osa04LNT0495900.1	osa-miR812b	Cleavage	4.0	8.418	1	22
Osa04LNT0495900.1	osa-miR812c	Cleavage	4.0	8.418	1	22
Osa04LNT0495900.1	osa-miR812d	Cleavage	4.0	8.418	1	22
Osa04LNT0495900.1	osa-miR812e	Cleavage	4.0	8.418	1	22
Osa04LNT0495900.1	osa-miR812o-3p	Cleavage	4.5	8.639	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0495900.1	4	np4	Morphological trait	Panicle/flower	RG143	RG214
Osa04LNT0495900.1	4	tgwt4	Morphological trait	Seed	RG143	RG214
Osa04LNT0495900.1	4	np4	Morphological trait	Seed	RG143	RG214
Osa04LNT0495900.1	4	tgwt4	Morphological trait	Seed	RG143	RG214
Osa04LNT0495900.1	4	nan	Morphological trait	Panicle/flower	RG143	RG214
Osa04LNT0495900.1	4	nan	Physiological trait	Source activity	RG143	RG329
Osa04LNT0495900.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0495900.1	4	nan	Morphological trait	Panicle/flower	RG620	RG214
Osa04LNT0495900.1	4	QGn4	Morphological trait	Panicle/flower	RG143	RG214
Osa04LNT0495900.1	4	QGwp4	Physiological trait	Source activity	RG143	RG214
Osa04LNT0495900.1	4	rpf4.1	Resistance or Tolerance	Drought tolerance	RG214	RG620
Osa04LNT0495900.1	4	gpps4.1	Resistance or Tolerance	Drought tolerance	RG214	RG620

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus