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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0494900.1

AATATTTGACGCCGTTGACTTTTTAAAATATGTTTAACCATTCGTCTTATTCAAAAAATTTAAGCAATTATTAATTCTTTTTCTACCAATTAATTCATTGTTAAATATACTTTCATGTATACATATAGTTTTACATATTTCACAAAAGTTTTTGAATAAGACGAACGATCAAACATATTTAAAAAAGTCAACGACGTCAAATATT

Coding Potentia
Explanation CPC Score
noncoding -1.30951
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0494900.1 osa-miR812a Cleavage 4.5 5.813 1 22
Osa04LNT0494900.1 osa-miR812b Cleavage 4.5 5.813 1 22
Osa04LNT0494900.1 osa-miR812c Cleavage 4.5 5.813 1 22
Osa04LNT0494900.1 osa-miR812d Cleavage 4.5 5.813 1 22
Osa04LNT0494900.1 osa-miR812e Cleavage 4.5 5.813 1 22
Osa04LNT0494900.1 osa-miR2093-5p Cleavage 4.0 8.284 1 20
Osa04LNT0494900.1 osa-miR2929 Translation 4.0 11.851 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0494900.1 4 qChla4-1 Morphological trait Shoot/Seedling C2807 RM241
Osa04LNT0494900.1 4 qChlab4-1 Morphological trait Shoot/Seedling C2807 RM241
Osa04LNT0494900.1 4 pss4.1 Physiological trait Source activity RZ740 RZ590
Osa04LNT0494900.1 4 qPH1-4-1 Morphological trait Dwarf RM241 C2807
Osa04LNT0494900.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
Osa04LNT0494900.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0494900.1 4 rfw4a Resistance or Tolerance Drought tolerance RM349 RM1136
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus