Transcript

Sequence

>Osa04LNT0495800.1

CAGTACTACTCCCTTCATTTTTTAATAGATGACACCGTTAATTTTTTCTCACATGTTTGACCATTCATCTTATTCAAAAAATTTACATAATTATAATTTATTTTGTTATGAGTTGTTTTATCACTCATAGTCTTTTAAGTGTGGTTTATATCTTATATATTTGTATAAAATTTTTTGAATAAGACGAATGGTCAAACATGTAAGAAAAAGTCAACAACATCACCTATTAAAAAACGGAGGTAGTACTA

Coding Potentia

Explanation	CPC Score
noncoding	-1.19035

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0495800.1	osa-miR6248	Cleavage	4.5	9.233	1	21
Osa04LNT0495800.1	osa-miR2878-3p	Cleavage	4.5	18.92	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0495800.1	4	nan	Morphological trait	Root	RG214	C1016
Osa04LNT0495800.1	4	gpps4.1	Resistance or Tolerance	Drought tolerance	RG214	RG620
Osa04LNT0495800.1	4	tgwt4	Morphological trait	Seed	RG143	RG214
Osa04LNT0495800.1	4	np4	Morphological trait	Panicle/flower	RG143	RG214
Osa04LNT0495800.1	4	np4	Morphological trait	Seed	RG143	RG214
Osa04LNT0495800.1	4	nan	Morphological trait	Panicle/flower	RG143	RG214
Osa04LNT0495800.1	4	tgwt4	Morphological trait	Seed	RG143	RG214
Osa04LNT0495800.1	4	nan	Physiological trait	Source activity	RG143	RG329
Osa04LNT0495800.1	4	nan	Morphological trait	Panicle/flower	RG620	RG214
Osa04LNT0495800.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0495800.1	4	QGn4	Morphological trait	Panicle/flower	RG143	RG214
Osa04LNT0495800.1	4	QGwp4	Physiological trait	Source activity	RG143	RG214
Osa04LNT0495800.1	4	rpf4.1	Resistance or Tolerance	Drought tolerance	RG214	RG620

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus