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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa05LNT0521200.1

TTTTTTAATAGATGACGCCGTTGACTTTTTATCACACGATTAACCATTCGTCTTATTCAAAAAATTTACGTAATTATAATTTATTTTGTTGTGAGTTGTTTTATCACCCAAAGTATTTTAAGCATGATTTATATCTATACATTTACATAAATTTTTTTTGAATAAGACGAATGGTCAAACATATGTTTAAAAGTCAACGGCGTCATCTATTAAAAAA

Coding Potentia
Explanation CPC Score
noncoding -1.44606
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa05LNT0521200.1 osa-miR5824 Cleavage 3.5 8.936 1 24
Osa05LNT0521200.1 osa-miR6252 Cleavage 4.0 9.635 1 23
Osa05LNT0521200.1 osa-miR443 Translation 4.5 18.147 1 22
Osa05LNT0521200.1 osa-miR5340 Translation 4.5 10.809 1 23
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa05LNT0521200.1 5 QPl5 Morphological trait Panicle/flower RG13 RG346
Osa05LNT0521200.1 5 QFla5 Morphological trait Culm/leaf RG470 RG346
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus