>Osa03LNT0472300.1

CCTCCGTTTTTTAATAGATAACGTCGTTGACTTTTTTTCTTACATGTTTGACCATTCGTCTTATTTAAAAATTTTATACAAATGTATAAGATATAAATCCACTTAAAGTATTATGAGTGATAAAACAACTCATAACAAAATAAATTATAATTACGTAAATTTTTTTAATAAGACGAATGGTCAAACATGTGAGAAAAAGTCAACGGCGTCATCTATTAAAAAACGGAGG

Explanation	CPC Score
noncoding	-1.28093

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0472300.1	osa-miR5799	Translation	2.5	10.743	1	24
Osa03LNT0472300.1	osa-miR169i-3p	Translation	4.5	10.19	1	22
Osa03LNT0472300.1	osa-miR812a	Cleavage	5.0	8.738	1	22
Osa03LNT0472300.1	osa-miR812b	Cleavage	5.0	8.738	1	22
Osa03LNT0472300.1	osa-miR812c	Cleavage	5.0	8.738	1	22
Osa03LNT0472300.1	osa-miR812d	Cleavage	5.0	8.738	1	22
Osa03LNT0472300.1	osa-miR812e	Cleavage	5.0	8.738	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0472300.1	3	nan	Morphological trait	Panicle/flower	G249	RG418
Osa03LNT0472300.1	3	qSBR-3	Resistance or Tolerance	Sheath blight resistance	G249	G164
Osa03LNT0472300.1	3	qPES-3	Morphological trait	Panicle/flower	G249	G164
Osa03LNT0472300.1	3	QFll3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0472300.1	3	QSn3	Morphological trait	Culm/leaf	G249	RG418
Osa03LNT0472300.1	3	be1	Others	Others	nan	nan
Osa03LNT0472300.1	3	nan	Physiological trait	Flowering	R2404	R2856
Osa03LNT0472300.1	3	nan	Resistance or Tolerance	Drought tolerance	R1618	G164

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus