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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa04LNT0492300.1

ACTAGCTCCATATTTTAATGTATGACGCCGTTGACTTTTCATCCAACGTTTGACCATTCGTCTTGTTCAAAAAATTTATGTAATTATCATTTATTTTATTGTGACTTGATTCATCATCAAATGATCTTTAAGCATGACATAAATATTTTCATATTTTCACAAAAAAATTGAATAAAACGAATGGTTAAACGTTGATAAAAAGTCAACGGTGTCATACATTAAAATACGGAGAGAGT

Coding Potentia
Explanation CPC Score
noncoding -1.01707
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa04LNT0492300.1 DTM_#DNAt_MULE_japo_Os0037 Chr4 - 17732948 17734823 235
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0492300.1 osa-miR812s Translation 3.5 10.986 1 24
Osa04LNT0492300.1 osa-miR5799 Translation 2.0 10.986 1 24
Osa04LNT0492300.1 osa-miR443 Translation 4.0 14.722 1 22
Osa04LNT0492300.1 osa-miR812a Cleavage 2.5 10.542 1 22
Osa04LNT0492300.1 osa-miR812b Cleavage 2.5 10.542 1 22
Osa04LNT0492300.1 osa-miR812c Cleavage 2.5 10.542 1 22
Osa04LNT0492300.1 osa-miR812d Cleavage 2.5 10.542 1 22
Osa04LNT0492300.1 osa-miR812e Cleavage 2.5 10.542 1 22
Osa04LNT0492300.1 osa-miR1428e-3p Translation 5.0 11.723 1 21
Osa04LNT0492300.1 osa-miR812g Translation 4.0 10.986 1 24
Osa04LNT0492300.1 osa-miR812h Translation 4.0 10.986 1 24
Osa04LNT0492300.1 osa-miR812i Translation 4.0 10.986 1 24
Osa04LNT0492300.1 osa-miR812j Translation 4.0 10.986 1 24
Osa04LNT0492300.1 osa-miR812k Cleavage 4.0 9.521 1 24
Osa04LNT0492300.1 osa-miR812l Cleavage 4.0 9.521 1 24
Osa04LNT0492300.1 osa-miR812m Cleavage 4.0 9.521 1 24
Osa04LNT0492300.1 osa-miR812o-3p Cleavage 4.0 11.728 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0492300.1 4 An8-glum Morphological trait Panicle/flower nan nan
Osa04LNT0492300.1 4 nan Morphological trait Root RZ69 RG449
Osa04LNT0492300.1 4 nan Morphological trait Root RZ69 RG449
Osa04LNT0492300.1 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
Osa04LNT0492300.1 4 gwt4a Morphological trait Seed RG788 RG190
Osa04LNT0492300.1 4 spp4-2 Morphological trait Panicle/flower RG449 CDO456
Osa04LNT0492300.1 4 gwt4a Morphological trait Seed RG788 RG190
Osa04LNT0492300.1 4 nan Morphological trait Panicle/flower RG788 RZ69
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus