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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0495600.1

ACTACCTCCATATTTTAATGTATGACGTCGTTGATTTTTTGTCCAACGTTTGACCATTCGTCTTATTCAAAAAATTTATGTAATTATCATTTATTTTATTATGACTTGATTTGTCATCAAATGTTCTTAAGCATGACATAAATATTTTCATATTTGCACAAAAATTTTGAATAAAACGAATGGTCAAACGTTGGTCGAAAAGTCAACGGCGTCATACATTAAAATACGGAGGGAAT

Coding Potentia
Explanation CPC Score
noncoding -1.30984
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0495600.1 osa-miR812s Translation 3.5 11.065 1 24
Osa04LNT0495600.1 osa-miR5799 Translation 2.0 11.065 1 24
Osa04LNT0495600.1 osa-miR6248 Translation 4.0 8.325 1 20
Osa04LNT0495600.1 osa-miR812a Cleavage 2.5 9.71 1 22
Osa04LNT0495600.1 osa-miR812b Cleavage 2.5 9.71 1 22
Osa04LNT0495600.1 osa-miR812c Cleavage 2.5 9.71 1 22
Osa04LNT0495600.1 osa-miR812d Cleavage 2.5 9.71 1 22
Osa04LNT0495600.1 osa-miR812e Cleavage 2.5 9.71 1 22
Osa04LNT0495600.1 osa-miR1428e-3p Translation 5.0 12.729 1 21
Osa04LNT0495600.1 osa-miR812f Cleavage 4.0 8.848 1 24
Osa04LNT0495600.1 osa-miR812g Translation 4.0 11.065 1 24
Osa04LNT0495600.1 osa-miR812h Translation 4.0 11.065 1 24
Osa04LNT0495600.1 osa-miR812i Translation 4.0 11.065 1 24
Osa04LNT0495600.1 osa-miR812j Translation 4.0 11.065 1 24
Osa04LNT0495600.1 osa-miR812k Cleavage 4.0 8.848 1 24
Osa04LNT0495600.1 osa-miR812l Cleavage 4.0 8.848 1 24
Osa04LNT0495600.1 osa-miR812m Cleavage 4.0 8.848 1 24
Osa04LNT0495600.1 osa-miR812o-3p Cleavage 3.0 11.229 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0495600.1 4 rpf4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0495600.1 4 nan Physiological trait Eating quality RZ590 RG214
Osa04LNT0495600.1 4 nan Physiological trait Eating quality RZ590 RG214
Osa04LNT0495600.1 4 nan Morphological trait Root RG214 C1016
Osa04LNT0495600.1 4 OsAOX1a Resistance or Tolerance Cold tolerance R2737 R740
Osa04LNT0495600.1 4 pss4.1 Physiological trait Source activity RZ740 RZ590
Osa04LNT0495600.1 4 gpps4.1 Resistance or Tolerance Drought tolerance RG214 RG620
Osa04LNT0495600.1 4 nan Morphological trait Panicle/flower RM303 RM348
Osa04LNT0495600.1 4 qSN-4b Resistance or Tolerance Drought tolerance RM255 RM349
Osa04LNT0495600.1 4 Xa2 Resistance or Tolerance Bacterial blight resistance RM317 RM349
Osa04LNT0495600.1 4 np4 Morphological trait Panicle/flower RG143 RG214
Osa04LNT0495600.1 4 rfw4a Resistance or Tolerance Drought tolerance RM349 RM1136
Osa04LNT0495600.1 4 nan Morphological trait Root RM3276 RM3335
Osa04LNT0495600.1 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0495600.1 4 nan Morphological trait Panicle/flower RG143 RG214
Osa04LNT0495600.1 4 np4 Morphological trait Seed RG143 RG214
Osa04LNT0495600.1 4 tgwt4 Morphological trait Seed RG143 RG214
Osa04LNT0495600.1 4 nan Physiological trait Source activity RG143 RG329
Osa04LNT0495600.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0495600.1 4 QGn4 Morphological trait Panicle/flower RG143 RG214
Osa04LNT0495600.1 4 nan Morphological trait Panicle/flower RG620 RG214
Osa04LNT0495600.1 4 QGwp4 Physiological trait Source activity RG143 RG214
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus