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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa01LNT0461600.1

AATAGGTAACGCCGTTGACTTTTTCTCACATGTTTGACCATTCGTCTTATTCAAAAAATTTATGCAAATGTATAAGATATAAATCACACTTAAAGTACTATGAGTGATAAAACAACTCATAACAAAATAAATTATAATTACGTAAATTTTTTGAATAAGACGAATAGTCAAACATGTGAGAAAAAGTCAACGGCGTCATCTATT

Coding Potentia
Explanation CPC Score
noncoding -1.44667
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0461600.1 osa-miR5799 Translation 2.5 8.099 1 24
Osa01LNT0461600.1 osa-miR5824 Cleavage 5.0 8.758 1 24
Osa01LNT0461600.1 osa-miR169i-3p Translation 4.5 11.687 1 22
Osa01LNT0461600.1 osa-miR812a Cleavage 5.0 5.796 1 22
Osa01LNT0461600.1 osa-miR812b Cleavage 5.0 5.796 1 22
Osa01LNT0461600.1 osa-miR812c Cleavage 5.0 5.796 1 22
Osa01LNT0461600.1 osa-miR812d Cleavage 5.0 5.796 1 22
Osa01LNT0461600.1 osa-miR812e Cleavage 5.0 5.796 1 22
Osa01LNT0461600.1 osa-miR1442 Cleavage 3.5 13.864 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0461600.1 1 brt1d Resistance or Tolerance Drought tolerance C742 C904
Osa01LNT0461600.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0461600.1 1 Pi35(t) Resistance or Tolerance Blast resistance RM1216 RM1003
Osa01LNT0461600.1 1 nan Resistance or Tolerance Insect resistance RM543 RM472
Osa01LNT0461600.1 1 dth1.1 Physiological trait Flowering RG541 RG109
Osa01LNT0461600.1 1 ng1 Morphological trait Panicle/flower RG374 RG394
Osa01LNT0461600.1 1 sf1 Physiological trait Source activity RG374 RG394
Osa01LNT0461600.1 1 ng1 Morphological trait Seed RG374 RG394
Osa01LNT0461600.1 1 An10 Morphological trait Panicle/flower nan nan
Osa01LNT0461600.1 1 sf1 Morphological trait Seed RG374 RG394
Osa01LNT0461600.1 1 nan Resistance or Tolerance Drought tolerance RG690 RG810
Osa01LNT0461600.1 1 nan Physiological trait Source activity RG374 RG690
Osa01LNT0461600.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0461600.1 1 nan Morphological trait Root RM212 R2417
Osa01LNT0461600.1 1 qLEJ-1 Morphological trait Shoot/Seedling RM212 RM297
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus