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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa09LNT0583000.1

GAATTCTAATGAAGACAAACTTTATATCAAAATTGTAGCCCTCGACGCGACCTACAACTTTGTAGTTGAAAAGTTTTTGAATTAAAACTGGTTAGGGTCCCAAAATATTGTTGTGTGTTTATAGATTTTGAAATTTTAATTTTAAAATTACATTTTGGGGAAAAAAATGACTTATAATAAAAAAAATTCAACTATAAAGTTGTAGATAGCGTCGAGGGCTATAAGTTTGATATAAAGTTTGTCTTCGTTAGAGTTC

Coding Potentia
Explanation CPC Score
noncoding -1.13696
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa09LNT0583000.1 DTM_#DNAt_MULE_japo_Os0089 Chr9 + 20170288 20171027 255
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa09LNT0583000.1 9 nan Resistance or Tolerance Drought tolerance RZ12 RM201
Osa09LNT0583000.1 9 nan Resistance or Tolerance Other soil stress tolerance R2638 C1263
Osa09LNT0583000.1 9 yldp9.1 Morphological trait Seed RM242 RM205
Osa09LNT0583000.1 9 gy9 Morphological trait Seed RM242 RM215
Osa09LNT0583000.1 9 Symptoms Resistance or Tolerance Other disease resistance RZ228 RG667
Osa09LNT0583000.1 9 mrl9a Resistance or Tolerance Drought tolerance RM201 RM410
Osa09LNT0583000.1 9 Ta1 Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0583000.1 9 qCCAI-9 Physiological trait Source activity RM257 RM201
Osa09LNT0583000.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0583000.1 9 Ta Morphological trait Culm/leaf RZ228 RG667
Osa09LNT0583000.1 9 nan Resistance or Tolerance Drought tolerance RZ12 RG667
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus