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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0469700.1

GAACTCTAATGAAGACAAACTTTATATCAAAATTGTAGCTCTCGACGCGACCTACAACTTTGTAGTTGAAAAGTTTTTGAATTAAAACTGTTTAGGGTCCCAAAATATTGTTGCATGTTTATAGATTTTGAAATTTTAATTTTAAAATTACATTTTGGGACAAAAAATGACTTAAAATAAAAAAAATTCAACTACAAAGTTGTAGATCGCGTTGAGGGCTACAAGTTTGTTATAAAGTTTATCTTCATTAGAGTTC

Coding Potentia
Explanation CPC Score
noncoding -1.10242
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa03LNT0469700.1 DTM_#DNAt_MULE_japo_Os0089 Chr3 - 24204891 24205574 255
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0469700.1 3 gw3a Morphological trait Seed R19 RZ403
Osa03LNT0469700.1 3 nan Morphological trait Panicle/flower RZ448 RZ403
Osa03LNT0469700.1 3 nan Physiological trait Eating quality RZ403 R19
Osa03LNT0469700.1 3 An5(t) Morphological trait Panicle/flower C1677 R19
Osa03LNT0469700.1 3 nan Resistance or Tolerance Blast resistance RM16 RM168
Osa03LNT0469700.1 3 gw3.1 Morphological trait Seed RZ672 RZ474
Osa03LNT0469700.1 3 nan Resistance or Tolerance Insect resistance G332 R19
Osa03LNT0469700.1 3 qGL-3 Morphological trait Seed R19 C1677
Osa03LNT0469700.1 3 qLWR-3 Morphological trait Seed R19 C1677
Osa03LNT0469700.1 3 n-p3 Resistance or Tolerance Other soil stress tolerance RZ403 R19
Osa03LNT0469700.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0469700.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0469700.1 3 Yd3-13 Morphological trait Seed RZ403 CDO337
Osa03LNT0469700.1 3 nan Morphological trait Shoot/Seedling RZ403 RZ630
Osa03LNT0469700.1 3 nan Morphological trait Shoot/Seedling RZ452 RZ448
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus