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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0511300.1

GAACTCTAATAAAGACAAACTTTATATCAAAATTGTAGCCCTCGACGCGACCTACAACTTTGTAGTTGAAAATTTTTTGAATTAAAACTGTTTAGGGTCCCAAAATATTGTTGCATGTTTATAGATTTTGTAATTTTAATTTTAAAATTACATTTTGGGACAAAAAATGACTTAAAATAAAAAAAACATCAACTACAAAGTTATAGATCGCGTCGAGGGCTACAAGTTTGATATAAAGTTTATCTTCATTAGAGTTC

Coding Potentia
Explanation CPC Score
noncoding -1.15842
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa06LNT0511300.1 DTM_#DNAt_MULE_japo_Os0089 Chr6 + 28442304 28443047 256
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0511300.1 6 nan Morphological trait Culm/leaf RG653 RZ140
Osa06LNT0511300.1 6 qLVG6 Resistance or Tolerance Cold tolerance RM340 RM30
Osa06LNT0511300.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0511300.1 6 ph6 Morphological trait Dwarf RZ667 RG653
Osa06LNT0511300.1 6 nan Morphological trait Root RM4447 RM5509
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus