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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa06LNT0511700.1

GAGCTCTAATGAAGACAAACTTTATATCAAAATTGTAGCCCTCGACGCGACCTACAACTTTGTAGTTGAGAAGTTTTTGAATTAAAACTGTTTAGATCCCAAAATATTGTTGCATGTTTATAGATTTTGAAATTTTAATTTTAAAATTACATTTTGGGACAAAACATGACTTAAAATAAAAAAATTCAACTACAAAATTGTAGATCGTGTCGAGTGCTACAATTTTGATATAAAGTTTGTCTTCATTAGAGCTC

Coding Potentia
Explanation CPC Score
noncoding -1.1367
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa06LNT0511700.1 DTM_#DNAt_MULE_japo_Os0089 Chr6 + 31202708 31203388 253
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa06LNT0511700.1 6 qREP-6 Resistance or Tolerance Other soil stress tolerance nan nan
Osa06LNT0511700.1 6 nan Morphological trait Root RM5814 RM3509
Osa06LNT0511700.1 6 nan Morphological trait Root RG653 RG433
Osa06LNT0511700.1 6 nan Morphological trait Root RM5814 RM3509
Osa06LNT0511700.1 6 nan Morphological trait Root RM5814 RM3509
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus