Transcript

Sequence

>Osa12LNT0567500.1

GACTTCAACTGAAAAAGTCATCAACAAGAAAGTTGTACAATTCATCTAGATCTACAATTTTCATTTTGGTCATTTGTTCATTCGACAAAGTGATTTTAACATTGTTCATAAATTTTACATATCTCCATATGGTTTATAAACTATAAGAGAGATATGTAAATTTTGTGAACAATGTTACTATCACTTTGTCAGATGAATAAACGACCAAAATAAAAGTTATAGATATTGATGAGTTATACAACTTTGTTTTTGTTGATTTTTTCAGTTCAAATC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.414896

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa12LNT0567500.1	osa-miR5543	Cleavage	5.0	14.968	1	21
Osa12LNT0567500.1	osa-miR5157a-5p	Cleavage	4.5	11.846	1	24
Osa12LNT0567500.1	osa-miR5157b-5p	Cleavage	4.5	11.846	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa12LNT0567500.1	12	qLEI12	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa12LNT0567500.1	12	qNEI12	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa12LNT0567500.1	12	qTIL12	Resistance or Tolerance	Submergency tolerance	nan	nan
Osa12LNT0567500.1	12	qLEI 4	Resistance or Tolerance	Submergency tolerance	RM5479	C901
Osa12LNT0567500.1	12	qSD12	Physiological trait	Germination/dormancy	RM3331	RM235
Osa12LNT0567500.1	12	nan	Resistance or Tolerance	Submergency tolerance	R1709	RM235
Osa12LNT0567500.1	12	nan	Resistance or Tolerance	Submergency tolerance	RM5479	RM6953

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus