>Osa01LNT0457300.1

AATTTCAACTGAAAAATTCATCAACAACAAAGTTGTATAACTCATCAATATCTATAACTTTTATTTTGGTAATTTGTTCATCCGACAAAGTGATTTGTAACAGTGTTCATAAAATATACATATCTCTTAGATAGTTTATAAACTATAAGAAAGATATGTAAATTTTTTGAACAATGTTACTATTACTTTATCGGATGAAGAAATGACCAAAATAAAAGTTATAGATATTGATGAGTTATACAACTTTTATGTTGATGACTTTTTCAGTTGAAATC

Explanation	CPC Score
noncoding (weak)	-0.107804

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0457300.1	osa-miR821a	Cleavage	1.0	15.78	1	24
Osa01LNT0457300.1	osa-miR821a	Translation	4.5	10.75	1	24
Osa01LNT0457300.1	osa-miR821b	Cleavage	1.0	15.78	1	24
Osa01LNT0457300.1	osa-miR821b	Translation	4.5	10.75	1	24
Osa01LNT0457300.1	osa-miR821c	Cleavage	1.0	15.78	1	24
Osa01LNT0457300.1	osa-miR821c	Translation	4.5	10.75	1	24
Osa01LNT0457300.1	osa-miR5157a-5p	Cleavage	4.5	15.027	1	24
Osa01LNT0457300.1	osa-miR5157b-5p	Cleavage	4.5	15.027	1	24
Osa01LNT0457300.1	osa-miR5506	Translation	4.0	20.68	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0457300.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0457300.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0457300.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0457300.1	1	nan	Morphological trait	Root	RM23	RM306
Osa01LNT0457300.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0457300.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0457300.1	1	qNVB-1-1	Morphological trait	Culm/leaf	R2159	C178
Osa01LNT0457300.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus