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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0475600.1

GATATCAACTGAAAAAGTCATCAAAAACAAAGTTAAATAACTCATCAAGATCTACAACTTTTATTTTGGTCATTTCTTCATATGACAAAGTGATAATAACATTGTTCACAAAATTGACATATCTCTTATCTGGTTTTATAAACTATAACACATATATGTAAAATTTGTGAATAATATTACTAACATTTTATCGGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACATTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.107873
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0475600.1 osa-miR821a Cleavage 2.5 12.634 1 24
Osa02LNT0475600.1 osa-miR821a Translation 4.5 11.221 1 24
Osa02LNT0475600.1 osa-miR821b Cleavage 2.5 12.634 1 24
Osa02LNT0475600.1 osa-miR821b Translation 4.5 11.221 1 24
Osa02LNT0475600.1 osa-miR821c Cleavage 2.5 12.634 1 24
Osa02LNT0475600.1 osa-miR821c Translation 4.5 11.221 1 24
Osa02LNT0475600.1 osa-miR1881 Cleavage 4.0 23.585 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0475600.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0475600.1 2 tgw2 Morphological trait Seed RM290 RM550
Osa02LNT0475600.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0475600.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa02LNT0475600.1 osa-MIR821a 94.909 275 1 274 1.49e-120 429
Osa02LNT0475600.1 osa-MIR821b 93.091 275 7 281 9.5e-113 403
Osa02LNT0475600.1 osa-MIR821c 94.007 267 1 266 8.75e-113 403
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus