Transcript

Sequence

>Osa07LNT0522500.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGATAGTAACATTGTTCACAAAATTGATATATCTCTTATCTGGTTTTATAAAACTATAACACATATATGTAAAATTTGTGAATAATATTACTAACATTTTGTCGGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia

Explanation	CPC Score
noncoding (weak)	-0.958163

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa07LNT0522500.1	osa-miR821a	Cleavage	1.0	14.43	1	24
Osa07LNT0522500.1	osa-miR821a	Translation	4.5	8.134	1	24
Osa07LNT0522500.1	osa-miR821b	Cleavage	1.0	14.43	1	24
Osa07LNT0522500.1	osa-miR821b	Translation	4.5	8.134	1	24
Osa07LNT0522500.1	osa-miR821c	Cleavage	1.0	14.43	1	24
Osa07LNT0522500.1	osa-miR821c	Translation	4.5	8.134	1	24
Osa07LNT0522500.1	osa-miR1881	Cleavage	4.5	23.979	1	24
Osa07LNT0522500.1	osa-miR5162	Cleavage	5.0	8.134	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa07LNT0522500.1	7	nan	Resistance or Tolerance	Drought tolerance	RG528	RG128

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore
Osa07LNT0522500.1	osa-MIR821b	94.928	276	7	281	4.36e-121	431
Osa07LNT0522500.1	osa-MIR821a	96.739	276	1	274	1.9e-129	459
Osa07LNT0522500.1	osa-MIR821c	95.896	268	1	266	1.12e-121	433

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus