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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0542600.1

GATATCAACTGAAAAAGTCATCAACAACAAAGTTGAATAACTCATCAAGATCTAAAACTTTTATTTTGGTCATTTCTTCATACGACAAAGTGATAGTAACATTGTTCACAAAATTGACATATCTCTTATCTGGTTTTTTATAAACTATAACACATATATGTAAAATTTGTGAATAATATTACTAACATTTCGTCAGATGAAGAAATAACAAAAATAAAAGTTTTAGATCTTGATGAGTTATTCAACTTTGTTGTTGATGACTTTTTCAATTGAAATC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.965594
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0542600.1 osa-miR821a Cleavage 1.0 14.413 1 24
Osa11LNT0542600.1 osa-miR821a Translation 4.5 6.55 1 24
Osa11LNT0542600.1 osa-miR821b Cleavage 1.0 14.413 1 24
Osa11LNT0542600.1 osa-miR821b Translation 4.5 6.55 1 24
Osa11LNT0542600.1 osa-miR821c Cleavage 1.0 14.413 1 24
Osa11LNT0542600.1 osa-miR821c Translation 4.5 6.55 1 24
Osa11LNT0542600.1 osa-miR1881 Cleavage 4.5 24.873 1 24
Osa11LNT0542600.1 osa-miR5162 Cleavage 5.0 6.55 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa11LNT0542600.1 11 chs Others Others nan nan
Osa11LNT0542600.1 11 gpl11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0542600.1 11 gw11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0542600.1 11 yld11.1 Resistance or Tolerance Drought tolerance RZ537 RZ900
Osa11LNT0542600.1 11 qBFR11 Resistance or Tolerance Blast resistance RM209 RM5349
Osa11LNT0542600.1 11 qDLR11 Resistance or Tolerance Other soil stress tolerance RM2596 RM286
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
Osa11LNT0542600.1 osa-MIR821a 97.473 277 1 274 8.78e-133 470
Osa11LNT0542600.1 osa-MIR821b 94.946 277 7 281 1.21e-121 433
Osa11LNT0542600.1 osa-MIR821c 95.911 269 1 266 1.12e-121 433
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus