>Osa05LNT0520600.1

GAAAACTTGGAAACTACCGTTGGATCGAGAAATGGACGTCCGAGATTCGTCCAAGTCACCATGAGTTAAAATTTAACTCTCAGAAAAATTTTAACAATTTAACTCTCAGAAAAATTTTAACTCATGAGTAAATCCGCGAGTTAAATTTTAACTCATTGTGACGTGGACGAATCTCGGACGTCTATTTCTCAATCCAACGGTAGTTTCTAAATTTCC

Explanation	CPC Score
noncoding	-1.38707

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa05LNT0520600.1	DTM_#DNAt_MULE_japo_Os0124	Chr5	-	24889754	24890047	215

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa05LNT0520600.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0520600.1	5	nan	Morphological trait	Seed	RM163	RM31
Osa05LNT0520600.1	5	nan	Physiological trait	Eating quality	RM163	RM31
Osa05LNT0520600.1	5	qRFC-5	Physiological trait	Eating quality	RG470	RG474
Osa05LNT0520600.1	5	qRGR-5	Physiological trait	Germination/dormancy	RM421	RM480
Osa05LNT0520600.1	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0520600.1	5	nan	Physiological trait	Eating quality	RM305	RM178
Osa05LNT0520600.1	5	APAGE1	Physiological trait	Eating quality	nan	nan
Osa05LNT0520600.1	5	qNBL-5	Resistance or Tolerance	Blast resistance	RZ649	RZ225
Osa05LNT0520600.1	5	QPl5	Morphological trait	Panicle/flower	RG13	RG346
Osa05LNT0520600.1	5	QFla5	Morphological trait	Culm/leaf	RG470	RG346

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus