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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa11LNT0543600.1

TTCTAGAATTTTCCAAAGCTCTCCCGAAAAGTCATTCGGGTGTCATTTATTAAAATAGGCGTAACTTTCTCATACGGACTCGAAATCAGGCAAATAATATATCCACGGACATCTACAGAAAAAGTTACATCCGATTTTCCCCTACTTTGTCGGGTTCGGCGATATTAAAACCTCCAAATTCTGCTTGCAAAATTGTGTTTTCGAGGAGAGAAGTTTTTCGGTAGAGCTTTGGAAAATTCCACATG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0935602
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa11LNT0543600.1 DTM_#DNAt_MULE_japo_Os0105 Chr11 + 24588238 24589593 244
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa11LNT0543600.1 osa-miR396a-5p Cleavage 5.0 17.429 1 21
Osa11LNT0543600.1 osa-miR396b-5p Cleavage 5.0 17.429 1 21
Osa11LNT0543600.1 osa-miR2055 Cleavage 5.0 20.17 1 21
Osa11LNT0543600.1 osa-miR5144-3p Translation 5.0 20.17 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus