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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0140000.1

ATTTGCAGCATCAGTAATCCGTGGTTATTATTATTAATTGCTCACATCACATCCGGTGGCTCATGATCCAGCCAACATATATATGTACTCCAACTATAAATGGGAGTAGATGAGATTGGTACCTGCAGTGCAGGTATGTGTGTGTGTATATAGACGCGAGCAAATGAGCAATATATATAGATGGATGAATGATGATCATGGCATGCCGGCGGCGTGATCGTGATCGTGATCGTGATCGATGGCGAGGTGAGTGGAGGAGGAGGAGGAGGGCGGCGGCTGGTCGTCGTCCTCGTGGCAGCAGAGGCAGAGCATGCCGCCCAGGAAGCCGAGCTGCTTGCAGCAGGCGTTGCACTTGCCTCTCTTGTAGCACACCCCCTAGCACTTGTAGATTGGGTAGTTGCACGTCTCCGCCTCCGCCGCCCACTGCATCATCGCACCATGCGAGGCGATGAGGACGGTCACTAGGAACAGCGCCACCACCGGCTTCATCTTCACAGTCATCCTACTCGTACGCCTCAATGCTCACTCGCTATCTAGCTGCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.885397
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0140000.1 2 493577 A G
Osa02LNT0140000.1 2 493662 C A
Osa02LNT0140000.1 2 493711 G A
Osa02LNT0140000.1 2 493718 A C
Osa02LNT0140000.1 2 493769 T C
Osa02LNT0140000.1 2 493770 T C
Osa02LNT0140000.1 2 493941 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0140000.1 osa-miR1875 Translation 4.0 23.114 1 24
Osa02LNT0140000.1 osa-miR2105 Cleavage 4.0 14.985 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus