>Osa02LNT0140700.1

AAAACTTGTAATCACATCATTTTTTGCATTCAACAAGTCAAATAATTTTGAGGTTCCAAGAACAGTGGTCAAAACAGTAAAGAATCAAAATACTTACAACTCACAACTCAAACTGCGCCATTATGCTACAAATATATACTACTAGTAGGCTTCCTCTAAAACTGCTGCACTTTCTAAATTCAGACCAACTACTTACAACAAAAACACCACGGCCATCTAACTACCAACGTGAGTGGGCTAGCACACCCCTTTACGACAAAGCATTGAGCCATTGACACCATGACCATCACAATCAGATGCAAAGATGATACGGCTAATGAGTTTGGCTCGAATCATCATCCCCACCAGAAAGCAACCAGCGCAGGTACTCAGTTCCATTGTCCAACGACGAAGCGTCGCCGTGCATGGTCACCCTCTTGCGCGTAAGAGTTTCGACAGTCACAGCTTTCCTCTTCCGTCCACCTCTCGGACACGAGAGTAACTGCTCGTCCATCTCCGTGAAGTTTGCCTGAGTGTATACATGAGCGCTGGATTTCTCATGGTTGTCCCTGACATGCTTGTATGGAAACACCTTTTCACACCCCGTGAATCGACATGCGAAAGGTTTTACTTGATCATGGGACGCCTTTATATGTTTGGTTAAATTTGATTTATTGGAAAAAGAGCATTCACAGCCCTCAAAACTGCATTTTATCCTTTCAGTAGATGGCACCTCCTCATGGGCTCGTAGGTGCCTTTTAATGTTCTTCTTCAGGTGTTTTTCCCCACAGATATCACACTGAACATATTGATGGCAAGCCTGATTATGAGCCCTCAAACATTCAACATTTGTGAATGTCTTCATGCAGCCTGGTTCACAGCAGACTACTTCCACGTAGTCCAATTTCACATGTGATTCTTCATGTTTCTTCATCTTTGAAGCATACTTGAAAACCTTGTTACAGCCCTCCTCCTTGCAAACAAACTGCCGGTTGCTTTTAGTAGCAGTTTCATCCTCATGGATTTCCTTTACATGCCTTTGCATATTTGCCTTTATACTGAACTTCCTACCACAACCATCCATAGAGCAGGTAAACAACTTCCCTTGATGCTTAAGCATATGACGGTTCAAGTGATCTTTCCTAATGTAGCTGAAAGGGCAGTCTTCAAGTGGGCAAATGAACGATCTCTCCTGAAAGAGCGTGAGGAGGCAATCCTGTTGGAGCTTCACAGGTGGTCATCCCAACCTGTTACTAGTCCAGACAAGATTAAATATGCCTCATCGCATTTTGGAGTTCTTTGGGATCCAATGCTTCACACAGTTAAGAATCTATATCCTCATCAGAGTGACTTTGCATATGCTGCTTCAGATGAGCTGGCTTCTGGAAAGAAGCACCACACTCTTGGCAGGTGTGGTCACCTTCATGAACAACCTTTTCCCCATTTGACTTGTAGATTTCCGATTTGTCCAGTTCTTCCTTATGATGAGCAACCATGTGAGCTCGGATGAGACATTTTTTGGACCTAACAACCGTGCAAAATTCACACTTGTAGCGCCTTATATCCCTGTGTTGTGTTGCTTCAACCCTCATGTCTCCATCAATATCATCTCCAGAGCACATCTTGGAATCTTTGATGCGTTTGGACTGGAGGAGATCTTGGCTGCGACGAGGTGTGATTTCCCGCGCTTCTCCGTGAGGAGGATGGAGCGGCGGCGGCGGCGGCGGGGAGTGAG

Explanation	CPC Score
noncoding (weak)	-0.687711

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0140700.1	2	855083	C	T
Osa02LNT0140700.1	2	853796	C	A
Osa02LNT0140700.1	2	853804	G	A
Osa02LNT0140700.1	2	853891	T	C
Osa02LNT0140700.1	2	854174	A	G
Osa02LNT0140700.1	2	854489	A	G
Osa02LNT0140700.1	2	854528	A	G
Osa02LNT0140700.1	2	855183	C	T
Osa02LNT0140700.1	2	855258	G	A
Osa02LNT0140700.1	2	855777	G	C
Osa02LNT0140700.1	2	855908	T	C
Osa02LNT0140700.1	2	856049	A	C
Osa02LNT0140700.1	2	856451	G	A
Osa02LNT0140700.1	2	857092	A	G
Osa02LNT0140700.1	2	857245	T	A
Osa02LNT0140700.1	2	857371	G	A
Osa02LNT0140700.1	2	857375	T	C
Osa02LNT0140700.1	2	857796	A	G
Osa02LNT0140700.1	2	857877	A	T
Osa02LNT0140700.1	2	858105	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0140700.1	osa-miR5807	Cleavage	5.0	18.597	1	24
Osa02LNT0140700.1	osa-miR1858a	Cleavage	3.5	18.152	1	21
Osa02LNT0140700.1	osa-miR1858b	Cleavage	3.5	18.152	1	21
Osa02LNT0140700.1	osa-miR5158	Translation	5.0	12.306	1	24
Osa02LNT0140700.1	osa-miR159c	Translation	4.0	19.365	1	21
Osa02LNT0140700.1	osa-miR159d	Translation	4.0	19.365	1	21
Osa02LNT0140700.1	osa-miR159e	Translation	4.0	19.365	1	21
Osa02LNT0140700.1	osa-miR159f	Translation	5.0	19.365	1	21
Osa02LNT0140700.1	osa-miR5524	Translation	5.0	14.996	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus