>Osa02LNT0140800.1

CCAATCCAATATCTTACACCAATTGATCAGCACGTCAAAACGTATTAAGATTTCAGCATCTGTACAAAGAATTAATATTAATGTCTAGGAGTCATCCAAGATGAGAACCAAGACCAGATTTTTCCTGGAATGCGCTCTCCCTATTGTGTTTCTAACATTTCATCTACCATCCTTAGGCTCTCGTTTTCTTGTACCGACATACACACAAATATGGAGGTAACATTCAGGGTTCTTCAGGTTGTTGGCAACCCAAAGGAAAGGTATGTCCATGTCGACCTCAATGCCTTGCACCCTTACTAGCTTCACTATTTTACCCTTGTTGGCCACATTCGCCTCTTGCGGGCTCGACGAAGCAGACGACTCTAACTTCTCACAACTTCTTGGGGTGACATCAGAATCATCATTAGGGGCTGAATCTGGTGCCTGAGGAGCAGTTTCGGAATCGTCGGGTATACGTGATGCCTTCGAGCTGAAGAACTCAGGTAGCAAAGTTTTCAACGCATGTTCCAGGGTGATGTAGCTTCTACCTTCCTCCCTCCGTACTTCGAATGGTCGGTTAATATAGGATATGCTTTCCCAATCACCAACAGGTAGTGCATCTTCTAAATCATAAAGGTCTTCTTGAACACTGCGCACATATAATCGAACAGGAACCCTGCATGGTTTGCCAGATCCAGGAGATTCAGGCTCATCAGAACCTTGTTGACCCTCTACTGAGGAAGTTCGTACTAAGCAATCCTCTTCGAATGGTCCAAGCTTAAGCCTGGTGGAGATATTCATATACCCATCTAAGTTACCTTTCATTACTGATTGCCACAAAGCACCTTGATCAGCCTGAGACATATTCATCACATTCTTACTGTTGCCAGTGATGATGAAGGCAGCCTCTTTCAGGGAATTCATGTAGCTCCACTTTACACTATCTTCGCCATCACAGAGAGTTAAAATTTCAGAAGGATATCCCCTAAAATGAACTGTTAGATTCCATGGTCTTTCTGGATCTGCACATAGAAGGTCGTAAAGAACTCCAATGGGTATATACCTATAGTGCAAAGGTAAATCGGGGAGTTGGGAATTTGAGAGGGTAGTTTTGAAGATAATGTTAGAGCCAATAAATTCATATTCATAAATATTCGACACACTTCAACAATATGCCACTGACTTTGTCGATATCCATAATATGCCGTTGCCTTTTCCTTAACCTCTACAATTTACCATCGCCGTCTATAGTCTGTTAGTTTGCATTGGAGAAAAAACAAGTGTGCCCTTAGTGAAGATTGGCAGCACTGAGACCATGTCGTGCAAGGTACCGAGAGTTATAATAACTGTTTATTTATGCAACATGATTATAAATAATTACGAGCACATATTTTAAGTATTTTAATTATGAGCAAATATCTCCAAGGCTACAGGACAGGAGGGGGCAGATCTTTGATTGGGTGCCGATGACTGTTGAGGAGCGGTTGAGGATTGCACTGACGACAGAACCAGCACTCCAGCAGGGCCAGGGCCACCATGTCCCCTTGCAAGCGATGGCGGCGCTGACGACGGCGGCGGCACCAGCAACAGCTCTCCGGCAGGGGCGTTGTGTCCCCTTGTTTGCGACGGCAGCGCTAATGACGATGGCAGCACCACCAGCAGCCCTCCAACAGGGACGCCATCTCCCGTTAGATGTGACGACGGCTTTGACGACAATGGTCGGACCGCCGCTGTGGATGGCGGTTGGGCCAGCGCTACGGATGGTGACGCTGGTGACGGAGGTCGTGCCGGCGCTAGGGATGGCGGTGCTGGCGAGGACATGTGAGCGGCGGTAGGCGGAGATGCGGCGTGGCGCCGACGCGCCGTGGCGGCACTGGGAAGGGTGGCAATGCGGCGTTGGGAGATGCGATGCTAGGAAGAAAGGGCCCTAGGCCATGCGGATTAGATGATTCAAAGGATATTTTGGTCATTACTAAAAAAATTAACAGTGCAAACAGCGTGTAGCTTGACGGCGATGGTAAATTGTAGAGGTTAAGGAAAAGGCGATGGCATATTATGGATATCGACAAAGTCAGTGGCATATTGTTGAAGTGTGTCCAACTCAGTGGTACTGAGTAGATTCTCTCCATAAATATTGGTAGGAGATAACGTATGTTACCATTTTAAGGGCAGCCCTTTGTATTCAAACCAAACAGTGTCAATACCAGGCGGGAGTGTGCTGCTAAAATGAGCCTTTATAATTGGTACCAACAGTGGAAGATACCCGATTCTTGGCCCCAAAGTCAGGAAGGGCGGAGGTGGGGGGAGGGTGGTGACGTCGGCGTCGTGGAGGTGGACCTGGAGCGGCACGGCGCCGCCCCAGACCCGCCGCGCCGCCTCCGCCGACCACCCGGCCTCGTCGTCGCGCTGCGCCGCCATTGCCGCCGGAGGAGAGATCTGCCGCCGCCGCCGCCTAATCTTTGATGGTTTTTGCTT

Explanation	CPC Score
noncoding (weak)	-0.918331

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0140800.1	2	932185	A	T
Osa02LNT0140800.1	2	930646	C	T
Osa02LNT0140800.1	2	932160	G	A
Osa02LNT0140800.1	2	933402	A	G
Osa02LNT0140800.1	2	933641	G	A
Osa02LNT0140800.1	2	933674	A	T
Osa02LNT0140800.1	2	930641	T	C
Osa02LNT0140800.1	2	932766	T	A
Osa02LNT0140800.1	2	932842	A	G
Osa02LNT0140800.1	2	932953	C	A
Osa02LNT0140800.1	2	932971	A	G
Osa02LNT0140800.1	2	932994	A	G
Osa02LNT0140800.1	2	933346	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa02LNT0140800.1	DTM_#DNAt_MULE_japo_Os3369	Chr2	-	932406	933378	972

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0140800.1	osa-miR812v	Translation	2.5	15.936	1	24
Osa02LNT0140800.1	osa-miR417	Cleavage	4.5	15.798	1	21
Osa02LNT0140800.1	osa-miR390-5p	Translation	4.5	11.291	1	21
Osa02LNT0140800.1	osa-miR2097-3p	Translation	4.5	21.716	1	22
Osa02LNT0140800.1	osa-miR2100-5p	Cleavage	4.5	21.72	1	22
Osa02LNT0140800.1	osa-miR812o-3p	Cleavage	5.0	15.883	1	24
Osa02LNT0140800.1	osa-miR5162	Cleavage	3.0	12.687	1	24
Osa02LNT0140800.1	osa-miR5522	Cleavage	5.0	17.402	1	21
Osa02LNT0140800.1	osa-miR5487	Translation	4.5	9.747	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus