>Osa01LNT0011400.2

CTAGAAACTACAGTAGAAAAGTAAGAAAAGTACAACTCAATAGATCCCTTTTTCTCAAAAAAGAAAGAAAAATATCAACTCAACAGGTCTGAATGCCAATTTCCTTATAAGATTAGCTAACACGACATGAGTATATTTCTAGAAATCAACCGGGAAAAAACAATCTAGCAGAAAAGAAAAACCATACCAATCTAGCTGAAGAATGTTCAACAGGAGAAAAAGGGGAAAGCTGTAACTAACATTATTTTAACACTTACAACATTCATAACATCAACCGTTTCATCGACCACATAGATAAAGACATACATTATCTAAATCCATTTTGACAGTTCCAAGTCCCATTGTGATGGTACTGCAAAAGAATGAGCAACTGGAACACATATCACTGCTAATATACCAAATTTCTTACCTTCTGAAACTACATGACAGAAAATAGGCGCTAAGCTGCTAAGACAGTACCACACCATTGACTCAGATTCCTCACATAGGTGCCCACTAGGCAAAAGCTAATACCGCCCATAGGTCCTCCCAAAGTCATCATGTCTCTCATGCTCAAACTCGCTGTATGCAGCATGAGGCCTTGGGGCTGAATAGCTATCAGTAATATACGGATATTCACTCTTCGAGTCATTTGGTGGACCAGTAGCAGCAAATTGTGTAGCTCTCTGATCATAGTCTGGATAAGAAGTTTGGGCATAAGAAGTCGGATGAGCTTGCTGGTGCCTTTTAAAGCTTTGTTCAAGAAATTCATCCCACTTCCTTGAATGCATACTCCTCATGGCTGTTACTCTCTTCATGTGGTTTTCTCTCATTTCTCTCAATGACTCACGATGCTTGTAGTTCTCTTCATCCTCCTCTTTGTCACGGGCTATAGCTAACTCCATAGCTTCTCTTTTGAACTCCATTTCAAGCTCTTCCAAAGTTTGAGGATAGGAAGGCAGGTCAAACTTAAGGCTTAATCGGGAATCGGTTCCACGCGTCTCAGTGCTCCAGGTATTTGGCACATATGTAGCTGCATATTGGTTATTCCCATCATTTGATCTAAGGGAATCATCAATATATGAGGGTTGACATGGAGATTTTGATTGGGCTGGACGGCCTTTAGCTCCATAGTTGGCAGAAGCTTCAGCAAAAGGAAGAACATGCAAGGCATGCATTTTAGTTCCAGATGACTAAGATAGTACGACTGACACCTAAGTAGACTTTATTGTACACTGAAAGGAGGAATAATGCCAGATGCAATACACAAATTGCAGGCCATCCAAGTCAGATGTCTGGAAAACCTTTCGATATGGAACTTGTTGTATTCAAGTAAATTTGTCTGATCATAACCAGACATACATTGAGTCATTTGAGCACATAAATCTTGAACTTACCTCTAGCTTGTGGAGATTCTTTCGAAAACTTAGGCATATCATCATGTGAACGGCCATCTAGAGGCCTTTCGTTATAATATCCTTTACTTTGAGAGCGCGGAGCACTTCTTGGACTATGTGACCATCTAGAATCAGTGTGCCTTGGGCGAATATCACTGGTAGTTCGCACAGGGGATCTCAAACGATCCCGTTTTGGACTGCTTGAAGTATTTTTACCTTTACCCTCCTGAATGATTTTATGAACAGCATCGACACCTTTCGCTAGTATTAACCTATCTTTACCACTGACAAACAGGAACTTCTCATCCATTTTTATTTTACACCCCACATCCTTCTCAATCTGACTTATTGTCCTCTCAGTGAATAGATCCCTGACTTGTTTATCTCTTGCTGGAACTCTTTCAAAAAAATCTGCATTTCTCCTATTTGCTCCCAGCGTGGATGGACAACCCTGAGTAAAATGACCTGATTCTCCACATATTTTACAAATCATTTCTTCCTCCTTTCTCTTCTTCCAGTTCCTTTCTGTAGCTTTAGCTTTAGCCTCCCAGACTTTGGCTTCTCTGCTAGTGAAGTCAGTAGGGACAGCATTGGGATCTGGGGGGCCATCTTCCTCATCTGACTTTTCACGTTCGAGGGGCCTCTTCTCATCATTCACTCTAGGCGTCACATTGTTAGTAGTTGTTGCAACTGGACCACTGTATGCCTTCCCATAAACTTCATTGAATAGTTCATCATCAATTTCAGGACTTGGTTCCCTTGCCATTGGCAGATAATAATCTATTCAAGCTAGTCTTTGCTATGAAAAGCTGCTGATGATGGAGGCGCGCCTCTTCGGCCTTCGGGAGAGGAGGAGGGGGCGGCGGGTGAGCCCCGCCAGGCCAGTGGTAGGGGGCCTCCGACGACGAGGGCCCTCGCCGTGGCCGCCGGCGCCGTACGCGGCGGGCGGGAGGGGGGAGGGGAGGGTTC

Explanation	CPC Score
noncoding	-1.11895

Transcript ID	Chromosome	Locus	Ref	Alt
Osa01LNT0011400.2	1	8359151	G	A
Osa01LNT0011400.2	1	8359775	G	C
Osa01LNT0011400.2	1	8361311	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0011400.2	osa-miR5818	Cleavage	5.0	22.481	1	21
Osa01LNT0011400.2	osa-miR5079b	Cleavage	5.0	13.76	1	22
Osa01LNT0011400.2	osa-miR156k	Translation	4.5	9.8	1	21
Osa01LNT0011400.2	osa-miR1869	Cleavage	5.0	10.396	1	24
Osa01LNT0011400.2	osa-miR5076	Translation	4.5	16.563	1	22
Osa01LNT0011400.2	osa-miR5076	Translation	4.5	9.077	1	22
Osa01LNT0011400.2	osa-miR5076	Translation	4.5	9.031	1	22
Osa01LNT0011400.2	osa-miR5079a	Cleavage	5.0	13.76	1	22
Osa01LNT0011400.2	osa-miR5338	Translation	4.0	20.996	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0011400.2	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0011400.2	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0011400.2	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5
Osa01LNT0011400.2	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0011400.2	1	An9	Morphological trait	Panicle/flower	nan	nan
Osa01LNT0011400.2	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0011400.2	1	nan	Morphological trait	Root	RM7383	RM23
Osa01LNT0011400.2	1	nan	Resistance or Tolerance	Insect resistance	RM576	RM3412

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus