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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0143100.1

TCGCCATCAAGGCACCAAACCATGCATTCACTTTGATGCACAGATGCATGTACACATCAGAGCAATACATCCGTTCCTAGCTCTCCTTATGTACAACGAAAGTCCATCAACATATAGGGAGAAATAACCTGTAGTCTTTTAGGCTTTTTCCCTTCTCCATTTTCTTGGCTTATGCTTGGAATGACTCATGAAAAGTTCTAGGCAGAAGGAAGGATGTCGAGGGCCACTTCCTTCAGTGATGGCATCTCTTCTTGTTCATGCAAGCAGAAGAAACTGCCACCTATGTTTCTCAGAACCTTCCAAGGCCCAGGATAACACCTGAAAAGTGTTCCTCCTTTGAGTCCCTTAAAATTGTGAATATAATAAACTGTCTCCAGCTTTGGAAGAAATGTTTTGGAAAGTTCCGCTAGCTTTGGGTAGAAGAAAGGAGGGTAGTACCCACTTCTTATTCGATCTAGTTCCCCGTTGAATATTATCAGTTTTCGGTCTGTGCTAACAATTGCTTCCTTGTAAAGCTCTTCAACCACAAGCATTTCATTGACATTGAAATAGGGATAAGCCACGAGGAATATCTCGTCTTCTGGACGCACACGGTCTGACATTTTGACCTTTGTTGTAAAACCAAAATCTTCAAATAGGGATGGTTTTGTTAGATAATCTAGCTTCAGGGAACATCCTTCAAAGGCAGATTGTCTTGCAAATGAAACTTCATTTGCCTCAGGGAAGAAGATTCTGGTTCTTGTAGCTTTCTCAGCAGGGACAAAGCGATCACAGAATTCTCTTATAAGAAGCATGCTTCCAGTCATCTCAATTCCACCTTCACTGTCACCTGGTACAGATTGTAGTCCTGCTGTAGGGAACTCAATTTCCTGAAATACATTGCATCACAATTTCTTGTGCAAAAAAAGGAATAAAAAAATAAGTCAGACAGTGGACAGATTAAGGCTTTACCAATAGCTGCTTCCCATCCTTAAAAGCTGACTCAGCAGCTTCTTTTGCCTGAAATCACTGCGCTAGAAGTTCAGTGTAATCGCTTGGGAACTCTGCCCCAGACACATTGCGAGTGCCCTGACCTCCATTGACGGCACAAACATGGAACCCAGTTCTTAAATTCCTCTTTGTTGTAGTATAAATACCACCAGTGTAGTTGCCCTTGCCTTTGCTGATTGCTCGAAGTACCCAACCTGGGACCTGTTTATTGGGAAAGGAAGTTTTGGATAATGGAGGATTGGAGATGGAGCAATAACTGGTTGCCATGGTCACTGAACACTGGGGATGGGATTGGTGTGTTGGAGAGGGAGGGAGGGAGAAACAAAGAAGGCTATGTGGTAATGTAGAAATGTTT

Coding Potentia
Explanation CPC Score
noncoding -1.13902
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0143100.1 2 1533341 G A
Osa02LNT0143100.1 2 1533769 A C
Osa02LNT0143100.1 2 1534889 T A
Osa02LNT0143100.1 2 1534895 G T
Osa02LNT0143100.1 2 1535766 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0143100.1 osa-miR2873c Cleavage 3.5 22.029 1 21
Osa02LNT0143100.1 osa-miR6252 Cleavage 5.0 11.122 1 23
Osa02LNT0143100.1 osa-miR393a Cleavage 4.5 18.561 1 21
Osa02LNT0143100.1 osa-miR393b-5p Cleavage 4.5 18.561 1 22
Osa02LNT0143100.1 osa-miR438 Translation 5.0 17.573 1 21
Osa02LNT0143100.1 osa-miR1860-3p Cleavage 5.0 18.708 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus