>Osa02LNT0143400.1

CGGAGTAACCCATTACAACGAGAATTGCAGATTTTGTTTCACGAACAAAATCAAGATAACTCATCCCTTGTGTCTTGATGCAGGTATTCGGTCACACATCTCATGAACAGAATTTGCATATGGTACACGCAGCCAGATTCTCTCAGAACATGGCTAAAGAAAGATTGATTAATCAAGTATTCCCCATCGCTAACATTTTCAGTTTTTCAGACTTTCAGTTAATTTATTGACAAGGCCTTGCAAGTGACTATTCACGTCAGGGATGTTCTCCATGTTAGCTGAGCAACTTGAAAGCACTCGTGCTCGTGTATGAGTCGATGAGAGTATTCCACCACGACACCAGAAACCAAAATTGTACAGCCAGCACACTTGCGAGCTAGGACACTTTGTGCGAGATTTTTATGTAATTCATGAGCCTGCTCAGGGCTTTACCGCTGTCAATGGCTTCTCTTGCCCTGTCAAGTGCGGACTTGATATCCTCAGCTCCAGTGCAGCCTAAGAGGTGGTCAACCATGGCAGCATTTAGGACTATTCTGTCATAGGCTGGTCCTTTCTCCCCACTCAGCGCTGCCAAACCCAACTCCAAGTTTTTCAGGACTGATCTATCAGTTCGTGGAGTCTCAGTGGATTCAAAACCAAGTTCCTGAGCATTCACAATGACACTGAAGCCCTCTCTAGAAATGCCATCAGTCTCGGAGAAATCTGTGCTGTTTGGTATCCGGAACCCTGAGCAATGGTTCACTGGAAGTCCTTTTGATGCATGAGCAGATCTTTCTTTGGTTGTCATAGAAAGCGCACCCTCCTCACCCTTTACAACTAGTCCAGCATGAACAGTTCTCCTCCTCATGAGCATAAGCAATGGATCTTCATAGCCCACATGATAAAATCCAGCAACCATTGATTCTCTTCCTCGCGCTCTCACAAATTGCTGAACTTTCTCAGAGGTAGCTAGCGGTGGCCGTTTCTTAATATGCTCCCTAAGCCCAATAATCGAATATAATGGTGGGCAAGCTTCTTGGAGACCCAAATATGCAAAGCCGGTATTCTCATCCTCCAGTAGTGTTTTGGCCTGTAATGTGGACAAATGTGTGTTTGCACCCATGAATTTAAGCATCTGACCTTCTGTTATGCCTCCCTTGGGTGGCATCCACTCAACACCATGGAGGAGACAAGCCTCACCATAGCAGGCTCTAACAGCTGCAACAAACAGAGTACTCCTGAAAAAGCGTGTATTTCCATCATAGGGCTCACCATAGTGTGTCAATGATTTGACATCAGCAACTGGAGTTGGACCTAATTCATCATCAAAGGCTAGACAATATCCTTTGAGCTCGCGATCAGTCTCCCTATTCATCCGCTGTCCAATAAGAAATGCTGCCAGCAGTGCTTCATTAACCATAGTTGAATTTGCACTGGCTAATTCAACTGGTAGAACATCCTTTAGTACACCCTGAACTTCCTCATAACCCAAATGGCCACCAGCAAGAACTTCTCTCAAAGCACTGACAAGTCTCATCTCTGCAGTGCTTTGACCAACATACCGAGGTCCAGTTAAACCATTTGCTCCCATGATTGTTCCTTCCGGATCTGCTATAAATTTCACCTCGGGGGGAAGAACATTGACAAGCCGTGGCCAAAATAAGCTCATGGCACGACGCTCACCCTCACTCCATTGGGTGGCTTCTGGAAAGGAATTAGCTCTTATTGTCATGCCAGCGAAGAATGCACCCAGTTGTGCACTGGATACTGGCTCATCTTTGAGTTCTCCCATTCCGGAGCGGAGGATGGTGTCGAGGACGCGCATGGCCTGCTCCTCCCCGAGCGGGCGCGTCTGCTCGGGCCCCGTGCACACCCGCGCCTGCGCCTCCAGCACCGTCGCGTTCGGCCGCGGCATCCCCGGCGGCCGGTACGAGTCCGACACCGCCGGGTTCCGCCTCACCCCCTCCTCC

Explanation	CPC Score
noncoding	-1.24853

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0143400.1	2	1632688	C	T
Osa02LNT0143400.1	2	1633067	A	T
Osa02LNT0143400.1	2	1633128	G	A
Osa02LNT0143400.1	2	1633930	C	T
Osa02LNT0143400.1	2	1634549	C	T
Osa02LNT0143400.1	2	1635582	T	A
Osa02LNT0143400.1	2	1636142	A	G
Osa02LNT0143400.1	2	1633390	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0143400.1	osa-miR5821	Cleavage	4.5	7.249	1	21
Osa02LNT0143400.1	osa-miR169f.2	Cleavage	4.0	16.423	1	21
Osa02LNT0143400.1	osa-miR535-5p	Cleavage	5.0	14.087	1	21
Osa02LNT0143400.1	osa-miR1427	Translation	4.0	24.597	1	21
Osa02LNT0143400.1	osa-miR2872	Translation	5.0	22.948	1	21
Osa02LNT0143400.1	osa-miR2872	Cleavage	5.0	23.476	1	21
Osa02LNT0143400.1	osa-miR2876-5p	Cleavage	4.0	15.61	1	21
Osa02LNT0143400.1	osa-miR2931	Cleavage	4.5	16.312	1	20
Osa02LNT0143400.1	osa-miR5080	Translation	5.0	20.259	1	21
Osa02LNT0143400.1	osa-miR5160	Cleavage	4.0	19.668	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus