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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0150600.1

AAATTACAAATACATCATCTCTATGTACGAGGTAATTCACAATCCAGCGAGACAATATATGAATTTATGATTTAACTTAAGATAAAATTGAAAACAAAAAAAAAAAGATACTCCTCCGAGTCACAAAATTAGCAAACACAAGAACAATGGGGCATGCCGCACACAGGGTGAAAAAATGACTGAAATCTCAGCTTCTGCTCAGTGCACGCGGATGGTGCCTCCCGGTGTTTGTGCAGGGAAAAAAAAAATCTCTGTGGATGTTCAGCTACAGCTCTTCAGGCAAAACAGACAGGGTGCTGTTAGAAACAACTAAGGAGGGCACGAGAACAGCAGCGACGTGTTGGTTCCACCAAACCCAAAGGAATTCGAGATGGCAGCTCGGATAGGCATCTTCTTTGGGGAAGATAGAGGCATGAACGCGCCTTCAAACAGCGTGTCTGGTTTTTCTAGATTAAGTGTCGGTGGAGCGATGCCATGGTGGATGGCTAATACGGTGAAGATTGCTTCCACTGACCCAGCTGCCCCAAGCAGATGACCAATTGCTCCCTTTGTTGAGGACAATGCAAGACCACCTGATGTTGCATGGTCACCAAAGACAGATTTGATTGCATTAGCCTCTACAGCATCACCAAGAGGAGTTGAGGTCGCATGTGCATTCAGATAATCGATTTGATCTGCCTGAAGGCCTGACTGATCCAAAGCTCGTTTCATGGCTAAGGTAGCACCTCTACCATCATTTTGTGGCTGAGTTATGTGGTGTGCGTCACCAGACATTCCATAGCCTCTCACTTCTGCATAAATTTTTGCCCCACGTTCTTTTGCATGATCAAGTGCCTCCAACACCATAACTCCACAACCTTCACCAATCACAAATCCATCTCTACCACAATCAAATGGCCTGGAAGCCGCTTGAGGAAGAGAGTTATATTTTGTAGACAATGCTCTTAATCTAGAAAATCCAGCTATAGACAAAGCATCAATGCTGGACTCTGTTCCACCAGCCACCATTACATCCGCGTCTCCAAATTGAATCATCCGTGTAGCATCACCAATAGAGTGGGCACCTGTGGCACAAGCTGTCACAGCAGCATGGTTTGGACCCTGGAAACCATATCTCATGCTGACATGACCGGATGCCATGTTAATCAAAATCTTGGGAATGAAATATGGACTGAGGCGACGTAGACGATTTTCAAGTATCATCTGCGATGCATCTAAAATGTCTGAGATGCTTCCAATCCCTCCACCGATTGAGACTCCCGTTCTTTCCTTCTTCTCATCTTCTGAAGGCAACCAATTTGCATCTCTTAAAGCCTCATCAGCTTAGTCCAAGCCTCCTCGTCGAACTCGGCGTCGCCCTTCCCGCGCGGCACGGGGGCGGCGACCCTGGACGGGAGCTGCTCCAGCGTCCTCCCCGCGTCGGCTCCCCCCGGGAGGCGCAGGTCCTCGGCGGCGAGCGCGCGCACCGCGCAGCCGCCGG

Coding Potentia
Explanation CPC Score
noncoding -1.18529
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0150600.1 2 5422822 C T
Osa02LNT0150600.1 2 5422479 T A
Osa02LNT0150600.1 2 5424573 C T
Osa02LNT0150600.1 2 5424712 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0150600.1 osa-miR812p Cleavage 4.5 8.169 1 24
Osa02LNT0150600.1 osa-miR166a-3p Translation 4.5 17.698 1 21
Osa02LNT0150600.1 osa-miR166b-3p Translation 4.5 17.698 1 21
Osa02LNT0150600.1 osa-miR166c-3p Translation 4.5 17.698 1 21
Osa02LNT0150600.1 osa-miR166d-3p Translation 4.5 17.698 1 21
Osa02LNT0150600.1 osa-miR166f Translation 4.5 17.698 1 21
Osa02LNT0150600.1 osa-miR166g-3p Translation 4.5 17.698 1 21
Osa02LNT0150600.1 osa-miR166h-3p Translation 4.5 17.698 1 21
Osa02LNT0150600.1 osa-miR166m Translation 4.5 17.698 1 21
Osa02LNT0150600.1 osa-miR166j-3p Translation 4.5 17.698 1 21
Osa02LNT0150600.1 osa-miR1425-5p Translation 4.5 23.481 1 21
Osa02LNT0150600.1 osa-miR810b.1 Translation 5.0 23.117 1 21
Osa02LNT0150600.1 osa-miR812f Translation 2.0 8.824 1 24
Osa02LNT0150600.1 osa-miR812g Cleavage 4.5 9.197 1 24
Osa02LNT0150600.1 osa-miR812h Cleavage 4.5 9.197 1 24
Osa02LNT0150600.1 osa-miR812i Cleavage 4.5 9.197 1 24
Osa02LNT0150600.1 osa-miR812j Cleavage 4.5 9.197 1 24
Osa02LNT0150600.1 osa-miR1846e Cleavage 4.5 19.044 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0150600.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0150600.1 2 qEML-2 Morphological trait Seed R2344 R712
Osa02LNT0150600.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0150600.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus