>Osa02LNT0152100.1

TCGCGCTCCGCCCGTATTGCCGTCGCCTCCACTGGCCACCGCCGCCTCCTCGTTTGCACTGCCACCCTCCCACCGCACCTCCCCATCCGCACCACTGCTTCAAATCGTTTCCACCGCAGCGTTTTCCGCCGCCGCCGCTGCCGTGTTTCCCCATTGATCCGAATCACAGCTGCAAAGAACAGAACAAGATCGAGATCGACGATGGTGGATCGAGGTCAAAAATCAGATCGCAAATTCAAGCAGAAGTACTGCAACAAGACTGTCGCCATCTCTTCCTCCCTTGCCCACTGAATCCCATGATCCCATCCCAGATCGGCTCAAATAAAAGAGACGATGCCAAAGATGGAGTGATGAAGAGCGAGGCACAAATTTCTGTATGGCTACAATCATGGGGGAAGAATCATGTTCTTTGAATTGCATCTGCTATCAATCAACAAGCTAGGGAGCTCATAATGTTCTGATGAAGTTACTCGCAGAGGTGGAGCTTACCAACTTCAAAGAAAAGAAACATGAACTAGATTTTCTGAAACTATTATTCAGGGCAGAACCATCACTTACAAGGATGAGAATAACCTGTCATCATTCGTTTGCTGTCTAGGAGAAACTACCTGAAGATTTACAAAGTTTTGCTTTGCTTTTGCAAGCCAAGAATATTTTTGTTGATGCGAATTTCCTGAAATGAATGAGTTGTGGTTGATGGCAGGCCTACAGAGAAGAGAAAACCTCCTTGGCTTGGGCTGAAGGATTTTTGGTTGGCAATAATGCATAAATAGACAAACTACTGTAATT

Explanation	CPC Score
noncoding	-1.0294

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0152100.1	2	6014518	A	G
Osa02LNT0152100.1	2	6014607	T	C
Osa02LNT0152100.1	2	6014615	T	C
Osa02LNT0152100.1	2	6014699	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0152100.1	osa-miR5805	Cleavage	3.5	14.081	1	24
Osa02LNT0152100.1	osa-miR169i-3p	Cleavage	5.0	18.744	1	22
Osa02LNT0152100.1	osa-miR1851	Cleavage	4.0	16.346	1	21
Osa02LNT0152100.1	osa-miR1877	Translation	4.5	15.038	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0152100.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0152100.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0152100.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0152100.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus