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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0155000.1

GATATTACCGTGCACATGATTATGGGTGTGATCGATATATCTTTAGTCTTTGTCGAATTTATTGATTTTTACTTGGATTCACGAAAATAACATGTTGAATGTGCACGCCATGGTTGATTACTAACTTACTGCCTTCTATTTGTATTGGTCCCTTTCAGAGTACAATTTCCACAAACAGATGAAGCAGAATTTGTGAAAGGTGATAGTGCTGTCGACAACGAAATGATTCCAGGGGTGATTTAGAATCTTTGCCAGACCTTATGAATGAAGATTTGGGATATGATATGAGAGTCACGAAAGCCACGAGGAGAAAGAATCGAGTTCGGCACGGAGCAGGAGCAGCAGCATGCAGCGGCACTGCAGGGCGGCGCCAGCTCGATCTTCACGTTACATGATCAGTCGATCTCAAATGTGTGACAATGAGCCAATGATGATGATGAGCAGCTGTAGTTTGTTTTACGCCATAGTGGTAGTTTAAGTTGAGTTTGGACTTTGGAAGATCGATCAGTGCAAGGATAAGATGGATCGATGCCTTTTGAGTTCTCTAGAGGTGTGTAAGGGTACTATTCGGTTCTTGTTCTTCATGGGGGGGACTTACTGGAGCACAAGAGAGTTTGGCAGATGATCAAGCCCCTGGAGCCACTAGATAATT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.0493663
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0155000.1 2 8253567 C A
Osa02LNT0155000.1 2 8252102 A G
Osa02LNT0155000.1 2 8251842 A T
Osa02LNT0155000.1 2 8251910 G T
Osa02LNT0155000.1 2 8252179 C A
Osa02LNT0155000.1 2 8252369 C T
Osa02LNT0155000.1 2 8252377 C T
Osa02LNT0155000.1 2 8252392 A G
Osa02LNT0155000.1 2 8252462 G A
Osa02LNT0155000.1 2 8252500 A G
Osa02LNT0155000.1 2 8252866 C T
Osa02LNT0155000.1 2 8252891 G A
Osa02LNT0155000.1 2 8251843 A T
Osa02LNT0155000.1 2 8251658 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0155000.1 osa-miR1871 Translation 3.5 14.753 1 24
Osa02LNT0155000.1 osa-miR5522 Cleavage 4.0 14.022 1 21
Osa02LNT0155000.1 osa-miR169f.2 Cleavage 5.0 23.814 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0155000.1 2 qMXA-2-1 Morphological trait Root OSR9A RM71
Osa02LNT0155000.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0155000.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0155000.1 2 qLER-2 Morphological trait Culm/leaf R2344 R712
Osa02LNT0155000.1 2 qEML-2 Morphological trait Seed R2344 R712
Osa02LNT0155000.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus