>Osa02LNT0155300.1

AAGATCAAATGTAAAATATGTTATGGGAGGAATAAAATCATATCAACAACCCACACAAGCATACATAGATGCGACGTGAAGGGCACATCAAAGACTCCATACATTTAAGCTCTAAAACAAAATGGATTACAAAATATTAGGACATGACATGAGGGGATACATATACTATTCAGGTGAAAAAAAAAAAGAGCTGCCGACGAAGCTGCACTACATATCCAAGAAGTATTGTCACGCGTAGCGGCGAAAATGGCTTGTGATCTCGGCCATCAGCTGAGGAGATGGTCTACCAGAAGTTGGAATGGCTAGAAAATCTCTTGCAATCCTGGCTACCGTGGGATACCTGCCACAGTTGTTCTTCCACCACTTGAGAATATCGAAATCCACTTGATCCAGAGGGACGGTTTCATCTTGCAGATAGGCTTCGAGTTCTCTCATGTGTTCCTGTGAACTCGTATTGCCCTGCTCTGTGAGTTGCAAAGTACTCCCATTCCCTTGTATTGATGGATCCACATCCATTTCATGGATATGATTAGCATGCTCTGTGGCATTGCTCTCATTATTGTAATCTGTTTCAATGCCTTGTGTTTTGTACTCTGTGAAGAGCTCACGAAATTTTTCTCCTACCTTAGAAACTAGATCTACAGAGGGAGCATTCTTAAGAATGCTCTGAAAATTCTTGAGTAAGTTTTCAACATAGACGAGCTTATATCTCGGATCTAGAATAAGTGGTATGCTTAGTAACAAATATGACTTTAACAGAAAGCGGTCAAGTGTGCTCATTGCGTTCTGAACAGATATTAAAAGAACATGTTCATCCTTGAAACAATCAGTTAGTTCACCACTGGAATTTTGCATCCTTCCTGAACAATTGTTGAATCCGAGTACTAACGTGTTTCTCACTTCCAGCATCTCTATGAGGACCAAATTTGAAGTAGGCAAGCTGGAGGTTGACATCGTTTTGATGGCATGGTATATCCTTCCTAGCGTAGTGCGTAACACTTCTGTAATCCATGTCTCATGGAACATGACTTTGCCTGCTAAGGCTCTAATTTTTGCTGGTCCGGAAGAGCATTCCTTGTGAATAATTTGTAGCGCATAATAATGTGCATACCACCACTCGTCGTATGTCCAAGGGTGATCTAGCTGCAAATGCGAAGAAATTTCTCTGCGTTTCTTCTTCAAATTTTCATCTTCAAAGGCGTCGAGGCAATCTTGTCCGTAACAACTGAATGGATGTAGATTCGAAGCAATATCAGGTAAATCCCACCGTAAATTGGTAGCACAGAGCAGCTCATGTTGGGTTGCAGATAGATGTGGTAGATCATTATCATCGTAAATTATTTTTCCAAATTTTGTCGTACCAAAATTTTCTATTAGAACGCCACTAAGCTTAGACAAAAGGCCCCAATGAGAAATAATTCCCAACATACGCTCATAGTCCTCCGGCTCCCAATCTGTAACTGGGATGTCTATGATGTAATCTTTGATATCCAATATCTTACTGAGACCATAGGTGGTGTCATCTTCCACTTCTAATGCCTTAAACACCTGTATAACTCTGCAATGGAAATTCCACTCTTCATCAATGAAGTGGGCAGCCAAATACGCAACTTTCCCCCAGGCAGTTGTGGTTTTTCCTAATGATAAGCTAGCAAGCCCAGGCGTACGCCCAATAGCATCCTTCAAGCTGCTCATTTCTCGGTCGAAGAGCTCATCGCACCTCTTCCGGACATCGTCTCGCGACGGCATCTTGAAGTCAGGGCAGAGCATCCGAACAAATCTTGTGAACTCCACGTCTTCCACCATGGAGGAAGGGAACCCGTGCAGCGCGATCATCCTGATGAGCTGATCTTCAGCAGCAGCAGCAGCCGCTGTTTGCTCACCCAAATCATCAGAGCTCGATCTTGAGAACGCCGATGCACCATGATGAGAGCCCTGCTGCCTGCCACGCTTCCGGCAGGATTCCTGGTAGTGCCTGTTGAGACGCGAGGTGCCATTCTTGTAGCTGAGCAAGTTATGGCAGTGCCTGCACTCTGCCATGTTGTCAGCCTTCTTCTCAAAGTGAGCCCAACACTCTGACCCCATGCCCACTGATGAGAAGGCTGATCGATGGAGGGATGCTCCCTGCCACTTTCCTGAGCCTCTCTCTCGATCGATCCGGCTGCTGCCTGCTGCTGTTGCTCGGCTGCTTCTTCTCCAACTTCTTCGCCTAGTAGGAGTATACGAAGAGAGCGAGACGGTCAAAATGG

Explanation	CPC Score
noncoding	-1.18598

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0155300.1	2	8701912	T	C
Osa02LNT0155300.1	2	8701915	C	T
Osa02LNT0155300.1	2	8701535	C	T
Osa02LNT0155300.1	2	8700546	T	A
Osa02LNT0155300.1	2	8700625	T	C
Osa02LNT0155300.1	2	8700662	A	C
Osa02LNT0155300.1	2	8700676	G	A
Osa02LNT0155300.1	2	8700718	T	C
Osa02LNT0155300.1	2	8700860	C	T
Osa02LNT0155300.1	2	8701112	A	T
Osa02LNT0155300.1	2	8701195	T	G
Osa02LNT0155300.1	2	8701297	C	A
Osa02LNT0155300.1	2	8701666	A	G
Osa02LNT0155300.1	2	8701534	A	G
Osa02LNT0155300.1	2	8701671	G	T
Osa02LNT0155300.1	2	8701674	C	G
Osa02LNT0155300.1	2	8701699	A	G
Osa02LNT0155300.1	2	8701784	C	T
Osa02LNT0155300.1	2	8701860	T	C
Osa02LNT0155300.1	2	8701875	A	G
Osa02LNT0155300.1	2	8701877	A	C
Osa02LNT0155300.1	2	8701941	A	T
Osa02LNT0155300.1	2	8701980	C	T
Osa02LNT0155300.1	2	8702449	T	G
Osa02LNT0155300.1	2	8703045	A	T
Osa02LNT0155300.1	2	8701633	T	C
Osa02LNT0155300.1	2	8701900	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0155300.1	osa-miR812t	Cleavage	5.0	14.368	1	24
Osa02LNT0155300.1	osa-miR812u	Cleavage	5.0	14.368	1	24
Osa02LNT0155300.1	osa-miR1425-3p	Translation	4.5	17.399	1	21
Osa02LNT0155300.1	osa-miR1439	Translation	4.0	13.686	1	21
Osa02LNT0155300.1	osa-miR2907a	Cleavage	4.5	22.006	1	22
Osa02LNT0155300.1	osa-miR2907b	Cleavage	4.5	22.006	1	22
Osa02LNT0155300.1	osa-miR2907c	Cleavage	4.5	22.006	1	22
Osa02LNT0155300.1	osa-miR2907d	Cleavage	4.5	22.006	1	22
Osa02LNT0155300.1	osa-miR812n-3p	Cleavage	5.0	14.368	1	24
Osa02LNT0155300.1	osa-miR5071	Translation	4.5	14.049	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0155300.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0155300.1	2	qLER-2	Morphological trait	Culm/leaf	R2344	R712
Osa02LNT0155300.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0155300.1	2	qEML-2	Morphological trait	Seed	R2344	R712
Osa02LNT0155300.1	2	qLRS-2	Resistance or Tolerance	Drought tolerance	RM322	RM324
Osa02LNT0155300.1	2	qMXA-2-1	Morphological trait	Root	OSR9A	RM71

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus