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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0156400.1

ATGTGGTCTCCTAGTTCCTAGGGTTTCGAGAAGCTCCCAGTTAATTACCTTCGCAGGTCTAAGCCTGCAAAAGAACCTTCGATTAAGCTGTTTGTGGTCGTCTCGTCGTCTTCGCTTCGCGTTCTCCATGCATGGTTGTGATGATGATGTAGATGTGTATGTGTGAGCGCTGGCAGCGATCCACGGCCTCATCGGTTCGTGCGCTGGTGTTGGTAGCGTAGCCTTCGCATCGGCTTCGCCCGTCCTCCGTCGTTTTGCCTCGTCGGTCTTGAACAACATGTCGATGTAGATTGTTGGTGAAAACATGCATGGAGTTGCGTAACTTGAACGACTTGACGTTACAACAGTTGCGTCGAGATTAGATCAGAGGAGAATCAGGAACTGTTGGAGATGATCAGCGCATGTAATAGCTGGATTTAATCACATCTAGCACCCCGTTGAGAAGGACAAGAATGAACATGACTTGTTGCATGGCACTATAGCACTTTGATGATGTGTCGTCTTCCGATTGGTTGGCCATGTTGCCACAATAATAATTAACTTAATCAACATGCATTAGCTAGCTTGTTGCCATCCAACAGCACTGGCTCGCCGTCCTCCCGTCGTCCTTCCTCCTGTTGTTGCTGCCACGCCGCCGTGCGACGTGTGTATGTAAGGCCAACGGTCTTCCGTCGTCTTTGGGTGCTGCCATCACGCGTCAGTCGCCGATCACCGATCCGATCATGCGATGTGAGACTGCCGGCCGCCGGTCGCCGATCTGATCTGTAACCGGCCGGCGATATTTGTTGACGCAGATCGATAGTCGTCGTCGCCTGCACGGAGTGCCGCCGGCCGCCGGTCGCCGATAGCCGTCGTCGCCTACACGGAGTGCCACCGGCCACCGGTCGCCGATCTAATATGTAACCGGGCGATATTTGTTGACGCAGATCGATAGCCGCTGCCGTCATCCGGTGCCATAACACCAGCGCACACCGACGCGGCCGCACGAGTGTGCTCCTCCATACTCTAGTTGATGCCTCTCCATGCATGCGTATGTACGTGTTGCATATGAAATAAGAAGGAAACTGATCTTAATTAATTTTACCTTGGAAGACCGTCGATTCCATCTCCCTCCTCGTGCTCCCCTGCCGGACGCCGGTTCGTCCAAAGCCGCTCGCCACCGCCGGTGTGCTCCGGCCGCGCGCGCGCTGTTGCTCCGGTGCTGGATGATGGATGTGTTGATGACGAGGGATGGCTGCGTCGAGGATGGATGGTTGCGTCGAGGATGGATAGCTGCGTTGTGTGTTGATCGATGGGCGCGCAGATGCGTTGATGATGGATGGCTTGTGGGTACTGGATGCGTTGGTGAATGAATGTGTG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.26667
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0156400.1 2 10122998 T C
Osa02LNT0156400.1 2 10123389 A G
Osa02LNT0156400.1 2 10123569 C T
Osa02LNT0156400.1 2 10123972 A T
Osa02LNT0156400.1 2 10123215 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0156400.1 osa-miR5540 Cleavage 5.0 15.36 1 21
Osa02LNT0156400.1 osa-miR5804 Translation 4.0 22.069 1 21
Osa02LNT0156400.1 osa-miR5805 Cleavage 4.5 24.349 1 24
Osa02LNT0156400.1 osa-miR5835 Translation 5.0 16.082 1 24
Osa02LNT0156400.1 osa-miR319a-3p Translation 5.0 17.95 1 21
Osa02LNT0156400.1 osa-miR5504 Cleavage 4.0 12.21 1 21
Osa02LNT0156400.1 osa-miR5504 Translation 4.5 17.418 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0156400.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0156400.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0156400.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus