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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0156800.1

GCGGCGACGGCGGCGGCGGAGGCGGAGGCGGCGGCCGGCGACGAGGCGTGGTGCCGGGAGACGGTGCCCCGGGTGATGGAGCTGGTGAGCCCGCGCCTCCCCCAGCGCGACGCCTGCGCCCTGCTCGCCGTCAGCCCCTGGTGCCACCGCGCCCTCGTCGCCAACCCCAAGCTCTGGGAGGTGCTTGATCTGCATGAGATGAACAAAGCTGGTGACCGACTTATTTCAGCGATATCACTGCCAAGATATTGTCATCTCAAAATTATTAACCTTGAATTTGCTCAAGATATTGATGACCGGCATTTTGTTCGCCTGAAAGAAATGGGATGTACCTCACTGCAAGAGTTGGAATTATTGAACATAAACGCATGCCAAAAAGTTTCTGACAAAGGGATTGAAACTATTACAAGTCTTTGTCCAAACCTTCGGGCCCTTTCTATCTATTGGATTGTTGGGTACACCATTTCTGAATGTTTTCTTTGCCATACAGCCCCCCTTGTTTCTAATTGGTGGACATTTTGTTTCCACAGACTGACAGACTTAACCATTAGGCACATTGTGCAGAACTGCAAGCACATAGTCGACCTGAACTTGAGTGGTTGTAAGAATATCTCAGATAAAGGTATGCAGCTAGTTGCTGATAATTATGAAGGACTAAAGAAGTTGAACATAACCAGGTGCATCAAGTTGACAGACGATGGACTTCAAGAAGTGCTTCAGAAATGTTCTTCTCTTGAAAGCTTGAACCTTTATGCCCTGTCAAGGTAATATTGGAAAAAGCAAATGATGTTTATATGCGAACTCGAGTGTCTATTATCTATCATCCTACTTCACATCCTGCAGTTTTAGCGACAAGGTTTATAAGAAGATAGGATCTTTAACTAACCTTACATTTCTAGACTTATGTGGGGCCCAGAATGTAACTGATGATGGCCTTTCATGTATATCAAGATGTGTATGTCTGACATATCTCAATTTGTCCTGGTGTGTACGTGTTACTGATGTTGGGGTGGTAGCTATCGCACAAGGATGCCGGTCCCTTCAATTGCTTAGTTTATTTGGAATAGTTGGTGTAACTGATGTCTGCCTGGAGGCTTTGTCAAAACATTGCTCACGTAGTCTCACAACTCTTGATGTAAATGGCTGTATTGGTATTAAGAAGAGGAGTCGGGATGACCTGATTCAGCTGTTCCCGTTGTTACGGTGCTTCAAAGTACACAGCTAGTTGACCTGAATTTCTGTTAAGTTGTTTATTCTACCAGAGGTCAGTTCCCCCTGTTAACATTTAAAACACAATCGAGTTACTCCATGAAGAAAAACAATAGCAAGACAGTTTTGTCGACCTAGTGGCTATATGTATTTTGAATTTGGTGGAGATCACAAAGATTTTGTAGAACTTGTATTTGATTTTCTTACAGTGGTGGGAAGTTGATCTGTTTGTTTCTGGTCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.364434
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0156800.1 2 10437950 T C
Osa02LNT0156800.1 2 10438458 T C
Osa02LNT0156800.1 2 10438856 A G
Osa02LNT0156800.1 2 10438914 A G
Osa02LNT0156800.1 2 10440518 T G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0156800.1 osa-miR1861c Translation 4.5 15.259 1 22
Osa02LNT0156800.1 osa-miR1861e Translation 5.0 15.259 1 22
Osa02LNT0156800.1 osa-miR1861g Translation 4.5 15.259 1 22
Osa02LNT0156800.1 osa-miR1861k Translation 5.0 15.259 1 22
Osa02LNT0156800.1 osa-miR1861m Translation 5.0 15.259 1 22
Osa02LNT0156800.1 osa-miR2876-3p Cleavage 4.5 16.418 1 21
Osa02LNT0156800.1 osa-miR2921 Cleavage 4.5 15.762 1 24
Osa02LNT0156800.1 osa-miR2870 Cleavage 5.0 12.429 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0156800.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0156800.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0156800.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus