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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0156900.1

ATCCACTTAAATTTGGTACCTTAAAAAAAATCCTTTTAAAAAGAACCATCACCTTACAGTAATATTCCCTCCGTTTCACAATGTAAATAATTTTAGAATTTCTCATATTCATATTCATATTGATGTTTCCTCTTTATGCCGCGGCCCTCCGGCATGGCCCCTCCGGCCCCGGTGCTTTTTTCTTTGGCACCGTCCCTCCCTCTCCAGCGCGCCCTTCC

Coding Potentia
Explanation CPC Score
noncoding -1.12278
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0156900.1 osa-miR1436 Cleavage 2.5 7.564 1 21
Osa02LNT0156900.1 osa-miR1439 Cleavage 3.5 5.958 1 21
Osa02LNT0156900.1 osa-miR1881 Cleavage 3.0 7.44 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0156900.1 2 qLRS-2 Resistance or Tolerance Drought tolerance RM322 RM324
Osa02LNT0156900.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0156900.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus