>Osa02LNT0158300.1

GAATCGATCTCTTGTGTTTGTTGATCGATCGAGGTCGAGGATGCCGAAGAACAAGGGGAAGGGAGGGAAGAACCGGAAGCGGGGGAAGAACGAGGCGGACGACGAGAAGCGGGAGCTGGTGTTCAAGGAGGACGGGCAGGAGTACGCGCAGGTGGCGCGGATGCTGGGCAACGGGCGTCGTCGACGAGGACGACGCCGCCGCCCACGACGACTACATCCAGTTCGAGGACGAGGACATCGACAAGATCTGATCTCATCTACCCACTGCTGCTGCTGCTTCATCAGTCCAATGGTACAAAGAAACAATCCAAGAATTGCTTCTTGTTACTTGCTACTATTGTGATGTGTGGTGTGATATTATAATCACGGTGGTGTGATGTGTGAGGTCGTCTGCCTGAGAGAGACCTGTATATATGGAAGAGATTCGGGGGGCAATTATTCTGCCCAATAATCAAATATTGAATCGAATTGCTCGCTTTACGCGATGGGGTTCATCTAGTTTTGTTCTACTCTGGTTCATGTCTGATCAGTCTCTGTTGTTACACAGTTTTCATTACTTAGGGCTGTAGCCTGTATGCACTGGAACTAATATATTAACAGTATTTAGTATTCTGAC

Explanation	CPC Score
noncoding (weak)	-0.925658

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0158300.1	osa-miR166g-5p	Cleavage	4.5	10.992	1	21
Osa02LNT0158300.1	osa-miR2918	Cleavage	3.5	22.652	1	21
Osa02LNT0158300.1	osa-miR5489	Translation	4.5	12.946	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0158300.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0158300.1	2	qCTB2a	Resistance or Tolerance	Cold tolerance	RM324	RM301
Osa02LNT0158300.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0158300.1	2	tgw2	Morphological trait	Seed	RM290	RM550
Osa02LNT0158300.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus