>Osa02LNT0158400.3

TTAGGATAAAAATGATTAGTTTTATTTTACAAGTTATGTTTCCAACAAATAAAGTGTAACTCTGATTACATTTATTTTAGCCAGACTGGCCCAAGAGTAGGCTAAGCAAATTCATTAAGATTATGAGATGGTGTTACAAACTAAGCGTCCACACGAAGTTGTCAAAACCGGTTACAAAGAGCGGGAGAGAAAAAACTACAAAAGGAATAATGCCAATCGTTTTTCGCCTACCATGAAGCCTGCCTCCCTCCAGATTGTGATTTCTTCTTTGATGTCACCAAAGAGCTGCACAACCATACAACTTGCTGAGACAATCTCTGAAGAAGAAGAGTGTACCAAAAACTTTTCTGAGATAATCTCTGAAGCTTCTCCTTGAAGCCATCTGCCAATCAGCCAAGTCTACATTGAGGTCACTGGGAAGCGGAAAGCCAACATTCACCTAGCTCCTGAGCAATCTCCAAATCCTGTTTGTGAAAGCACATTGAACAAAAAGGTTGGGTGTCATCTTGAAATGTCAGGTTGCATAGGGAGCAATTCGCCTGATGAGGCCACCCGTCTGTTGTTTTAGAGCCATTAGACAATCAGAATATGAAGGCATAAAAATACATAAAACGGCATGTACTTCGGAGTATACTCTTATGAAGCTATATAAATTAAAGGATGCGACCACACAAATGAAAATTGAAACCGGATCTAGATCAAAGCTTATCGCAATGCAGTTAATAAGCTGAACATATAATTTACTTCAATACTCCAGCATTTACTATACAAATAGCTCCTAAATACCGTGCGCCAAACAGTGAAATGCCATGGTGAAACATGATAGGATTTTACCAAAATCTCCAGTTGGCCACAATGTCAACCTGTATTATAAACAATAGAAGTAAGCCAATATATTCAGATGCCTTATAGCATTAACAGATACTTTTTGATATCATGATTTCTCTTATTGTTATATATCAGAAACACGTTATAAACCTAATTTACAGTTTTAGTAAAGTAGGGGAACAAAAAAAATCTGACACTTGCATGTATTACATACAGTTTTGACCTTGGTAGCATGTTAATCTGCAAATCTGAACATTATTTGCCACAAATTATGTATATTTTCTTTCCAAACTTAAACAAAACCTGAAACACCATGATGTGATATTCATTGGTAGGAGTACATACTGGTTCTCAAACTTCCTCAGTGCCACTTTTTTTTAAAAAAAAATAGTATTGTACATGGCACCTGGGTAATCTGGCAATAGTTATTGGACAGGACAGATAATTTGAAATTGCTTTTGAAATCTAACCACCCAATCAGTACACCGCAAAATAATATTACAGGTTGTAGTCCGGTACCTAGAATAGTAGCAGAGTGCCGGACTGGGAAAAACCAAACAAAGAAGATATATTCAGAAATACACATATGATCTATTATAATGAAGCAGCAGACCTAATGTATAATAACTTCTAGATCACCTCGATATCTTTTTCTATAAAATGATCCTAATGCTCACTGTAAATAGGTGAATATGGGTTTGGAATCTTTTATTCCTAGGGGAAATATCGAGATAAAGATTTGGAAGATGAGAATCACCTTGGATTTATGCATATCCTTGAAGCGAAGGGGCACATCGCAGTGATCAAGAAGGTAGTCGGCCATCATTTCGTTCCTCGGCTCCGGCGGTGGATGGAGAAGAAAGTGGCTCCGGCGAGGATGCGGCGGCGTGGCGGCAGTACACAGGAGCGAGGAGGAGCGAAGTCACATTCCAGCAATTTTTAACTGATGGCAATACCTCGAACCTCCTCATCTCAGCAAGAAACATATCAAGAGATGGCTTGTCAGTCCTCACGTCTTGTTACAACAGCCATTGGTATTCTATCAATTTCATTTGAAAAAAATAATTTCCGGAGGGGAAGATATGTGGTGCATTTAGGGAACGGAAAGAATCCCCTACGATGGTGGATCAGACAGTGGCCTCGTTGGCAGAAGAGTCCAGATCCTCTTACAGAGCAGCGGAGAGGTCCGTGGACTCTCTGTTGCTGAGGCAACTGGCCGGATCTGCTGGGCGCCTTAGCGAGGGACCGGCCATTGCATCCGGCTTCGGGGAAAGAGCTCCATGCGTGAGGTGCCTTGATGTGGTGGCATCGGCGGGGGAAGGCGACGACGCAGGGCTCGACTGTGAAGGGGGATTGGAGAGCGAGCGTGACAGAGGGATGGTTGCCATCCGCCTCTCCCTCTTCACTCTCCCCACCAGTCATCTCCCGCGCGACGGCGCCTCCTCGCCGCTGGGATGGGGCCGTCGGGATGGGGGAGTCCGGTATGAGGGATGGCTGGATCTGTGACGGCGCGGTGGACAGCTGGCCGGGACCGCGCGACGACGACGACGACATGGAACCATCGGCGACGCGGTGGAGGAGGAGGCGGGATGGGGGGGATACTGGAGGGGTCGGGACCGCGCGATGACGACGGCGGCCTGGAGGGAGGAAGCGTCGGGAGGCGCAGCGCGCATCTGAGCAGCGCGAGGAGGCGCGGCGGCGGAGTCATCGCGCGGGGAGAGCGTGGGGGCGTAGATAGCGCGGTGGATTTGTGTGGTGGTGGGATGGCGGAATCGGTGATTTCGCTGTTGGATCAACAGATCGGACGGCTGAGGACAAAGATGATTGGGGGATGATTTGGC

Explanation	CPC Score
noncoding (weak)	-0.936582

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0158400.3	2	11739476	T	G
Osa02LNT0158400.3	2	11738770	T	A
Osa02LNT0158400.3	2	11739881	A	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0158400.3	osa-miR167c-3p	Cleavage	4.5	24.417	1	23
Osa02LNT0158400.3	osa-miR535-5p	Cleavage	5.0	13.184	1	21
Osa02LNT0158400.3	osa-miR810a	Translation	5.0	16.899	1	21
Osa02LNT0158400.3	osa-miR2867-3p	Translation	4.5	13.15	1	20
Osa02LNT0158400.3	osa-miR5157a-3p	Cleavage	4.0	14.78	1	24
Osa02LNT0158400.3	osa-miR5157b-3p	Cleavage	4.0	14.78	1	24
Osa02LNT0158400.3	osa-miR5492	Cleavage	4.5	7.331	1	21
Osa02LNT0158400.3	osa-miR2099-3p	Translation	5.0	20.748	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0158400.3	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0158400.3	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0158400.3	2	qCTB2a	Resistance or Tolerance	Cold tolerance	RM324	RM301
Osa02LNT0158400.3	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0158400.3	2	tgw2	Morphological trait	Seed	RM290	RM550

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus