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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0160800.1

CCGTAGTAACCATGGTCACATTAGCCACGGCTCATCATCTCGTCGTGAATCCCCTCCGCCTCCGCAATCCGCGGCGGCACCACACCTCCCTCCCGTCCCGCACCTCCTCCTAGATCACCGCCACCGATCCCGCGTCCTCCACCGTAGCCGAATCCCCTTCGCCGCGCCCATCGTTGGATCGAGCGCTGTCGTCATATCCACCTCCACCGCTGTCCAGTCTGCCGCCCCACATCCCCGTCCCCGGCGTTTCTCCACCTCGCACTCCACGCTGCATCGCCTGCCGTCGACGCTCGTCGCCGTCGTGCCCCGCCATCGCCTGCCGACGGCCTCCAGCACCTACCTCCGCCTGTCTCCTCGCCTCCCGCCCCCTCGCTCTCCCCCAAACGCCACCGCCTCCATCCACGCCACGCAGTCGATCCCCGCTCTGCTCTCCTGCGTGCCCCCCTATGCGTGCGCACTCTTCCTGCCGTGTGATCTCCGTCACGCCGCCACAGAGAATCACCGTCGCCTCCCACCACGTCAAGGCAGGGGTCGAGCAGGCCGGCAGGCCATGGACGGCTGTGCCCAACGCTCTTGACATGTACTACATTGCTTCGTGCCATTGCTCCCGTAGTGCTCGATCAAATGCCTTTAGTTTTTTTCCCCCAAAAAGTTAGGCAAAAATTCAGTTCAGCCTAGACATTCATGCAGCCCCAAAAGTTCACCATTATTTAATTATTTCAATTTTCAATCATGCTATAAAAACCATAATGTTAGTCATACTCTACCATACTGCTAGCAAGTAAAAACAGCACCTACACTGACTCACCTTAATGACAATGACAATTAGATTTAATGGTGGTTGCAGAATTATCACCCCACTTACATGGTCAGGTTGTGACGAAATATCATACATACATCTGGTCAGTATAACACTATATCCTACCATTTATCCCTTGTTCTGCATTTTTGTTGTAGATGGACCTTTCTGTGCAATTAATTAAAGGCACTCAACTTTTGTACTATGATCTCTGAACAAAGAAATTTTGTGAAGGGGGAAGTCTTTCTGAAATTGACCATCTGGAAAAAAAGGTTCTGACATTGCTTTCTATGATCAACAGTCAATTGTTACTAAATTGCAGGGCCTAACCTTTGTATGTGCTATGAGTCAATCCAATGAAGGCATAAATTTTTAATTATCGTTGTCCAATTCTGGTGTTGCCTTGAATTGTGGGAGAGGTACTACTAACGTGCATATGACCAGGTGTCCTATACATTGTAGATGAGATCATTTTGTGAAAAATTAAAACCATCTCATTATGGTAGTGTCTGAGTTGTGAAGTTGCTGATGAAACATCCAAACTGAATGAAGTTTTTTTTGCTGTAGATAATGTGCTAAATTTATTACAAATCAAAATTCTACCTTGCCCATCACCATCGTTCTCCATCATGATCGACCTTCTCTCCAGTCTCTCCAAGTAGACAAACCACAGCTTTGCTGTTGCAGAAGGCAAACCACAGCTCGTGTCCCTAGCGCAAGCGGGGAATGAGATCTCTCATGAGAGTTTGAAGCGTGAAGGCTGTTTTTCTTGCGGGTTTCTTGTGTGAGATTGGGGTTTCATGTCTGTATGTGTGTATTTGTGTGGACATCTAACTTTCTGGTGTTGTGCAGACCTAAGTATCTTGGATCCGCTTGTGATCGAAGGTCTTGACTACTCTCTTTTGATCCATAGTATTGTGTCAAATAAATTTGATATGTAGCTTTGGTGTCCTTAAATGGCTTGGTTATTTTATAACTGTAGTGGTGGCAGCTTCGAAATTTGCATTGCTCATGTAGACAGGGGACAAATTATTTTTTTTGGCATGTGCTCTTTTGCTTGGAGTATTGTGTGCCTATATAGCTGATTGAGCTATGTTTAGAAGCACTGAACAAGAATCATTACAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.133548
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0160800.1 2 13878357 T C
Osa02LNT0160800.1 2 13879745 C T
Osa02LNT0160800.1 2 13880060 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0160800.1 osa-miR167a-5p Cleavage 4.5 14.515 1 21
Osa02LNT0160800.1 osa-miR167b Cleavage 4.5 14.515 1 21
Osa02LNT0160800.1 osa-miR167c-5p Cleavage 4.5 14.515 1 21
Osa02LNT0160800.1 osa-miR319a-3p Translation 5.0 8.071 1 21
Osa02LNT0160800.1 osa-miR167d-5p Cleavage 4.5 14.515 1 21
Osa02LNT0160800.1 osa-miR167e-5p Cleavage 4.5 14.515 1 21
Osa02LNT0160800.1 osa-miR167f Cleavage 4.5 14.515 1 21
Osa02LNT0160800.1 osa-miR167g Cleavage 4.5 14.515 1 21
Osa02LNT0160800.1 osa-miR167h-5p Cleavage 4.5 14.515 1 21
Osa02LNT0160800.1 osa-miR167i-5p Cleavage 4.5 14.515 1 21
Osa02LNT0160800.1 osa-miR167j Cleavage 4.5 14.515 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0160800.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0160800.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0160800.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0160800.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0160800.1 2 d50 Morphological trait Dwarf nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus