>Osa02LNT0162100.1

ATAAAGCTCACAGAAAACTAAACTGCAAAATCAGTACCTGCAAAGTTTAGGCGCATATATTGTGCTGCATTTGAAGTTACTTTATTATGTATAGATAGACATTATTCTGTCATTTGAGATTTGTAACAACATGATTGGGCATGATGATCTACATAGAAAAATTCCAATGGAAAGATAAGTACAAACACTATTATGCCATATGTATTAATCATATCTATTGCGCACCACCATGAGGTCCCGGACTGAATGGTATATCATCACTTCATTACACCCTTACTATCCTTGATTTTGGCACCAGAACAGGTCACAGGGCGAGATAGATTTTTTTATTTGAATGAGTCTGTGTCATACAACATAAGACTGTAAAAGGGCAAAATTTAATTGCTGGGTAGGTTCAACTCGAGAAGCATAAAGTTAGTACATATTATGCATAGATTATACACCGCAACAGAATAAAGAGGTTGCAGTAGAGGATTGGAGGAAAAAAATCTGTAGAGATCAAATAGTGCTTTTGGCTCATTAAGCAACAAAATCAGTTCATTATGTATTTGGCTCAATTACAATCGGATAAGTTTATTATCTTTTGAGGTAGTCATAGAAATATTCTACCAAAAAATAAGCAGTTTTCAGCGATCATTATCTATATAATAATGCAAGCATCTACAGATCTAACTACAAACGAAAAATTTCTCTCATGCGTTTCATTAGCAATTTTAAATTTAGATTCTATTAACAATGCCTAACTGGTGAAAATAAGGTACCTTTAAATTTTTGAAGCTACTTATTTAAAAGCTAGGATCGATCCAAATCTCAAGCCCAACAAACCATTTAGACTTACACCATGCAGGCAGGGCACCATGCAGAAAAAACACGTCAAATTTTGTAAGGAATATAAATGAATCAGAGAGGAATGATGATAGCTTGACTCACCAGAGGCTATGATGGCAGACCAACCGGAGAGCGAATGGGCGATAAGAGATGTTTTCTCCTCCCTCTCATGACCAGAATAAATAGGAGCCTGGTAGATTTCCAAATTTCAATGGCAGTCGTAGGGAAGAAACCACCACCCAATCTATCGCAGTAGAGTAAGGAGGCGATAATATTAGCAGCAACAATGCAGCGGATACAGACAAACGTCGTTTATCAAATCGACACTAAAGACAAATGAAGTTGATGAAATCGATGAGTCAGGTGATGTGAAGTTGACTAACAAACCAAGAGATAAGCTTTCATGGAGATGGATTCATCAAGATAAACATCTCCAACTACCTGCATTCGTTTATCAGCACTACTCTTTTGCCTCAGTCCATTGACCTCAACCTCCACAACCTCTGATCGGCTGACAAGCTGGTGATAGAAGGGCACGGTGAGGACGTGAGGTTGGCATTGATCATCAGGCCCAGCGTGCTGGTGGGAAGAGCCTCTTGAACTGCTCCTGCGCTGCAGAGGAAGCATGGAGAGGTGCACCTTGCGGAAGTCCTTCTGCTACTGCTCGTGTGGAGCCACCAACATTGTTCTCCAATGTAGACTAAGACAAAATATATCAGCAGTCCTTATTGGAGTTGAGAAAGATCAAAGGCAGTTTAGTGAATTGAGGATATGTGCGCGCTTCTCAAATTTGAGCATGACGACCTAGATTATCCATCAGATTAATCAGATAGGTAAATCTCACTGAGTTCATTCAAATCTGGACAGTTTATGACCTGCAAGAAATTAATATCTCAATGAACTTGCAATGGTTAATCAATTTAACTGAAAATACTTGTAGTAGCAGGTTGTGTTATCAATTTTGTTAGGGAAGAAAGATCTGATAGCCATAGCGTTGAAAGGCTTGAAGAGCTTATACTAACAAAACTGAGATTGCCGCAGCCATCCATCTAATTTGAGAACTGGTAGAAATCATTTATCTGAGACAAATATATTTAGCTCATCCCTGGTTTAGACTTTAGAGGGATGTCGTCATGTCGTCTTCAGCGAGCGAGGTCATTCCAGTGGACTATGGCGTGGTACGGCAAGGCGGCGAGGGCAGGACGGAGCTGAAGGAGCAGGCGAGACGGTGTCGGCGCAAATAGATCCCCCCTCTCCTTCCTCTCCATCGCGTCGCGAGTAGGGAACTAAGGACACCGGCTGTTCGGCCCGCGCGCGAGGAGGCGGTGCGGCAGGGTGGGCAGATCCCGTCTCTCCTTCCTCTCTGTCCCAGTGTGAGCAGGGAAGCAAGAGGCCGAACAGCCGGGGTAGGGCGAGGTGGCTCCGGCGGGCGCGCGCAAGTCGGCGGCGGTGGCGCGAAGGGCAAACGGCGGCGACGGCGCGAGGAGTAGACAGCGGCGGCTCCATGCGGCAGGGCGAACGGGATGAGATTGTGAAGAGGTGGAGGAGGGAGTGGGGAACCGGCGGGCGTGCACAAGGAGGCTGCGGGGTAGGGCGCGTGGTTCCAGCGGGCGTGCAGTCGGAGCCGGCGGCGGCGGCCGGCTGTCCTGCGGGCGCGCGCAGGAGGCGGCGAGGGGAGGTGGGGAGGAGGCGAGGCGGCGGAAGGAGGAGGAGGAGGCGCGGTGGCAGAAGGCGGAGAAGGCGTAGGAGGAGGAGGCGCGGG

Explanation	CPC Score
noncoding	-1.20778

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0162100.1	2	15000543	T	C
Osa02LNT0162100.1	2	15001322	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0162100.1	osa-miR5535	Translation	4.5	16.181	1	22
Osa02LNT0162100.1	osa-miR5808	Cleavage	4.5	17.495	1	24
Osa02LNT0162100.1	osa-miR6247	Cleavage	4.5	14.544	1	21
Osa02LNT0162100.1	osa-miR395a	Translation	4.5	7.923	1	21
Osa02LNT0162100.1	osa-miR395u	Translation	3.5	7.923	1	21
Osa02LNT0162100.1	osa-miR810b.2	Translation	5.0	11.965	1	21
Osa02LNT0162100.1	osa-miR1859	Cleavage	4.0	16.253	1	22
Osa02LNT0162100.1	osa-miR2863a	Translation	4.5	11.325	1	21
Osa02LNT0162100.1	osa-miR2873a	Translation	5.0	8.034	1	24
Osa02LNT0162100.1	osa-miR2922	Translation	4.5	13.605	1	20
Osa02LNT0162100.1	osa-miR2873b	Cleavage	3.5	10.764	1	21
Osa02LNT0162100.1	osa-miR5488	Translation	4.5	22.737	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0162100.1	2	d50	Morphological trait	Dwarf	nan	nan
Osa02LNT0162100.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0162100.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0162100.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0162100.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus