>Osa02LNT0162800.1

GGGAGTCCCCCAGGCGAGGTAGAAATCGAATGAATATTACAGAATAAAATGGTGAAAACTCAAAAGGCTTCTTCTGCCTATAGGGGATTTACTATGATTTACCAACGATAGCGAGAACAAAATTATAGCAAAAGAAATACAACAAATGACGCTAAACTGACTTTGGTACTTTACAAAAGGCGAAAAAACTGCAGATCCTATCCACACTTGCATGGAGAAAAATAGCAAGCTGCAACTTCCGATGTGCTCTTACAAAAACAGGCATCAGTCTCGGCAAGAGAATTCTGAATGCGCGACCCGCATCATCACAACTGTGCAGGATCGTCCCACAAATGCTCAATCCCCGGGGAACAAACAAGGCTCACTTGGTGGTGATGCTTTGCGTTGCGCCTGAAGCATTGTTCGGCAAATCCGTGAGAGTAACCAGCTTTGCAACTGCATCAACAGCAGACAGATCATCACCATCTGTTAGAACTGCAGTAACAACATCTGAAGATACTCCAGTGCTCAATTGGATAGTATTGGAGTGCTGCCCACTGCTAACTTCTACAGCATTTGTCATATCGCGGGCCATAGAACTGGATGTTTCACTTAATTCGTCTGTATCCAGGAATAGGCAGACCACAGCACAATCATCAATTTTAGAAGTGGGGAAACGTGCACGCCAGGCACGGTGAGCTGATTCGACTAGCAATCGTGCTGCAGAGGCCCGAGAAGTAGCTCTGTTGACAATACTAACAACTTCAGTGTTTGACAGCACATCCCAAACCCCATCAGTAGCCAATACAACAAACTCATCCTTTTCTGTGATACGGTGGTACGAGACTTCAGGCATAGAGATTAGACCATAATCCTTGAGACAGAAGTCTCCAAATGCCCTAGCCATGGCCAGTCCAGGGGAGTTGTACTTCGGAAGCCAAACACGAGCAACCTCTGGCTCCTCAGGAAGTGCAAATATCCTGCCCCTGCGTTGCCTGATTCGCTGTGCTTCACTTGGAATGTTAGGTTTGAGATCAACTGTCAATTGGACAGCCATAAGCTGATTATCTTTATCTCTTGTGCCTAAGATGGCCCGCGAGTCCCCGAGGTTACCAATTATAAGATTCCGTCCCTGCTTGAGCACTGCCACTGCTGTTGTTCCACTGAAAAAACAATCTATACTTTTATGTAACTTGAGATCTCTATCCATGACATTGAACGCCCTCAAAAATGAAGTTCTCAATGCTGTGAAGATCTCTGGGTACTCTCCGTTCTGCTCAGCATCTCTGCCCATGTTTCCAGGGGATCCTGTTTCATCTCCATTGCTTTTGATGCTGCTAGTGGATGTCTGTCGTCCTTCATCCGTCCCCAAATCCGCACCAAGCTTAATGGGCAGAAGATCTCTCACCCTCTTAGCAACCAAATGGCCGTTTGGTCCATGGCCATCAAAAACACCACAAAAAATGGTATCCTCTCTTGAACAGAAATTCTCCCAGACGATCATGGCGTCTTGGTTGACGCCTTTCTTCCCCTGCAGCGTGTAGAGCGACGCGACGGCGCAGGCCCCGTTCCCCGCGATCCGGCCGGGGATCCCCCTCAGCTCGGCGGCGGCGCGGCGCCCATCCGCCCCAGGCGCGGGCCCTCGCGGCGTCTGCGCCGCCAGGCGCGGCTGCTGCCTCTGCGGCCTCGCCGCCGCCGCCCACGTGACGCCGAGCGCGCGCAGCACGCCGAGGAGGCACCCGAGGATGTCCTCGACGCAGCCCCCGCCACCCCCCGCCGCGGGCGCGGGCGTGGCCGCGGGCGCCACCATGACGACGCGCGCGGCCACCGCGACCGCGACGAGGCGCTGGTGCTGCTGCTGCTGCCGCGCGCCTCCCCTCCCTCCTCCTCCTCCGATGGCTACAAGCGCGCGCCCCCGATGGCTTTGCCGAGGGGTGGCGCTGCTGCTGCTGCTATTATTGTATCCCGCAACGCAACGAAACGAATGGCCTCCCAATCCCAAACCAAGGCAGCCAATGGGGAAGGAGGTAGTTGGTTACGGGACAAGAGGCCCGCGTGGGTCTCAACGGCGACGCGACTAATCCAATCGCCCTAATCAACGACGACGCCTCTGCCGTCAAAATTCTCTCCCTGCGTGGTGGTGGACGAGCGGCGGGGCGAGCCAAGGGCGGTGCGGTGCGGGGCGAATCTGGGGAGGAGGAAAAAGGGCAAGTAAAAAGGGCGGAAAAGGGAATGGAGGGAGAGAGGGACGCGAGGAGGAAGGAAGGAAGGAGTAGTTGGAGAGGTAATAATTGTTCTTTTCCCCGTTGAAGCGGAGAAGCTTGTGTGTGTGTGGCTCTCG

Explanation	CPC Score
noncoding (weak)	-0.380469

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0162800.1	2	16009860	T	C
Osa02LNT0162800.1	2	16010002	A	C
Osa02LNT0162800.1	2	16010938	T	C
Osa02LNT0162800.1	2	16011389	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0162800.1	osa-miR812p	Translation	5.0	13.006	1	24
Osa02LNT0162800.1	osa-miR5823	Translation	3.5	18.081	1	24
Osa02LNT0162800.1	osa-miR419	Cleavage	4.0	21.42	1	21
Osa02LNT0162800.1	osa-miR1320-3p	Cleavage	4.5	17.077	1	21
Osa02LNT0162800.1	osa-miR3979-5p	Cleavage	5.0	4.936	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0162800.1	2	d50	Morphological trait	Dwarf	nan	nan
Osa02LNT0162800.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0162800.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0162800.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0162800.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus