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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0163400.1

CAGCCCATCATATTATATTCATTTATATTAGTATCAAATAACAAGTGTGCTAAGCCCATATAGGCCCAACAATCAAACACAATAACAACCCATATAGCACAACCCGACAAACATCCAATACAACACAAATCTTACAACCAAACTAGGTTCAGTCGGGTGAGCAAAACATAACAGTACCACCATATCCTAGATAGCAAAACAAAGTTCTACATCACTGACCATATCTACAAAGTCCAATCATATCTTGCCCTTCTTGTGCAGGATTATCAATGAACTTCCATCTCAGCAATAACATTCTTTACAGGCTCATTAAAACTCGTATTGCTGTTGCAATGGCACATCTTGAAAAGATCAAATGCAGTGGGTGGAGCATCCTTATACTTAGTTTGCTTCTTTTCTTTTTTAGCATCAGCAGATACAGTTTCTTTCATCTGGCTAGCTGTTTCTGTGGCCATGGAAGAAGTGTGAGGCAGAATGAGCTTATCAGCCTATGTGGGTTGCTCACCGAAACTCTCCAAATGCCTCTGTGATGCAGTGCTTCAATCCCTCCTTGAAAATTTGAAAAATGCAAGTAGATTAGAACAAAATAATGGAACAACTGATCATAACAAAGTCGGAGGACTATATATGTTACTATGTTACCGCCAAGCACCTCATCAAGTGCCTGGCTCCCAGTGGTGATCCGAACAGACTTCCGCGAAAAATAATAAACTAGAAACGCACGAAATTGGGGGAGAAAAACTAGAAACAGCCTCCCGCTAATTTATCTCCAGAACGCACGAAATTGGGGGAGAGAAACTAGAAACATCCGAACACGCACAGCAACCAGAAGCTGCTCGCAAGCAGACAAACCAAACCAAACCAAACCATCCATCATTGGAGAGGGAAATCGGGAGGGTATGCGACGGCGTGAGGCATGCATAGAGAGGGGATCGGCGGTGGTGGGGGAGTGGATGGTGGCGGCGGATCCACCGCTCCCGTGCCCAGCAGCGGCGGAGACGGATGCCGGCCCGGAAGCCGGCGCTATCGGCGGCAGATCCGCCGCTCCCGAGCCTGGCGACGGCGGAGACGGAGGCGGCGTGGTAAGCGGTGGGGGAGAGTAAGCCGGCACCGCGAGCGGCAATAGAGGAGGAGGACGCCGCCGCACGCTGTCATCGCCTGTACCCACCGCCGGAGAGGAGAGGAGAGTGGATGGGACATGGGAGTGTGGCGGCTGAGGGTGGAGAGAGAGAG

Coding Potentia
Explanation CPC Score
noncoding -1.11957
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0163400.1 osa-miR5789 Cleavage 3.5 15.906 1 21
Osa02LNT0163400.1 osa-miR2096-5p Cleavage 4.5 19.337 1 21
Osa02LNT0163400.1 osa-miR5075 Cleavage 4.5 23.264 1 21
Osa02LNT0163400.1 osa-miR5491 Cleavage 4.5 14.736 1 21
Osa02LNT0163400.1 osa-miR5503 Cleavage 5.0 12.552 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0163400.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0163400.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0163400.1 2 d50 Morphological trait Dwarf nan nan
Osa02LNT0163400.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0163400.1 2 qSS-2 Physiological trait Sterility RM301 RM263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus