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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0164000.2

CATGTATCAAATATTTCTGGATCCATCTTATAAAGCTGATTAAAGCATGCAAAGATGAACTTATCCTCGGGTAACCCATAATCTGATCTTTTATGTGGGCATACAGGATCAAGACAATCACGATTTTTCTGCTTGTAGTCATTGACAAAATAACAATGAGGCAGATGGACGAGTTTCTCAGAATATATGTGTGAATAGCAAGTTGGCGAAACAAACTGCAGGATCATTTATAACTTGTAAGAAACCACACTCAAATCAAAAATCACTGAATAATGTGTAGTCACTCCTATCATACCTCATCTGTAACTAGGTAGTCTATATATGCAGCCCCAGTTGTGCCTGGAAACCCCATGTACGAAACCTGGATGGGGGCTGGTTGCAGTGCAAAAATTTCATTCCTGGCACCCTGTTTAAATCATAAGCATAGATTTTAGTAGTAAATAGCAATGCAAAAGATCCTAGTAGAATTGATGTAAGTTGGCCTTCACGCAAGAAACCAAAAAATTCCATACCGCGTACTAAGGATGAATGATGCTTATATTTAATAGCCCAAGTCTCAACTTTACAAATAATTATATAGAAAGGCCGTTAATGTCCTATGGGATGTGTAATTTTCCACCACAATACTTAGTTAAATATCCATAGAAGAGCCCATTATGGCGAAGGAATACCCAATAAGAATCAAAGGGCGTGCAATGGGAACAGATATATATTCATAAGCATTGTGTATTACCTTTGTGTAACCATTAAGGTTTATTAATATTTGTATTTTGTCTTGATTAATGATTCTGGCAATCATATCAGAGGTCATGGCAGACACATCCACAAAATGCTCAGCCTCAGACTGAATACGCTGCCTCCATTCAGTACCATCATTTTGACTCAGCGCATAGCAGAAGACCTGTTGCGCCCAAACATGAGTTGCACATGAGATTTCAAACATATGAACAATATGCTAGAGAGAGAGAGAGAAGGTGAAACAACCTCAACATTGTCACGGTCATGCATTCCAAATACTGAACCCATGAGATGGGAGAGGGGATGATTCCCAAAATCGCTGCTAACATATCCAACCCTTAGTCGACAGTGTTTACCCTCTGCTTTGACAGGAACAGGAGGGGGATGCACAAAGGACGGCAATCCAAAACGAGAGGCAATCAAGGAACAATGAGCAGCATATTTACAGCTGGTAAGTA

Coding Potentia
Explanation CPC Score
noncoding -1.39658
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0164000.2 2 17048412 G A
Osa02LNT0164000.2 2 17048985 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0164000.2 osa-miR5534b Cleavage 4.5 17.79 1 21
Osa02LNT0164000.2 osa-miR156f-3p Translation 5.0 22.203 1 22
Osa02LNT0164000.2 osa-miR156h-3p Translation 5.0 22.203 1 22
Osa02LNT0164000.2 osa-miR156j-3p Translation 4.5 22.203 1 22
Osa02LNT0164000.2 osa-miR156l-3p Translation 5.0 22.203 1 22
Osa02LNT0164000.2 osa-miR444d.3 Cleavage 4.5 10.895 1 21
Osa02LNT0164000.2 osa-miR2092-5p Cleavage 4.5 12.808 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0164000.2 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0164000.2 2 d50 Morphological trait Dwarf nan nan
Osa02LNT0164000.2 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0164000.2 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0164000.2 2 qSS-2 Physiological trait Sterility RM301 RM263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus