\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0164400.1

GTGCTAGAGGGATGGTTCCTAACCCAGGCAAAAGAACAGAGCCCAATATATTGGTTGCAACAACTCAATTTGGATATCTATCATCTTCCTCCTATGTCCTATGGATTCATGGAATGATTTTCGACTGTACGTGCATGATAATACAGATGCATTACGTTAATTTGTTGCCCTGAATTGATTAATTTGCCATGTGTCTCAACACAAGACAACAAAGTGGCATTGTCGCATAAGAGAGAACCTGCATATTCTGAAGTGTTTAAAAGCTGGGTGGATTTATTGTTGGCTCATCGTGGGGTGGTGCCGTGGTGGCGGCAGATCCGTCCGTTGTAGAGTCAACGGCGTTGGCAACTCTCGCCGCCCGCAAGCTTCTTCCTTCAGCCACCAGTTGCTTCTTCCCCACCACTTCATGGGGGCGGGGGCGGCGGATCCACCCGCCGCAGAGCCCACGGCGACAGATCCGCCTGCCACGACGCCAGCGGCATCGGCAGCTCCCATCGCCCACTAGCTACTCCCTCGTGGCATTTTTTGGGGCCGACGATGGCAGATCCACATGTTGTGGTGCCGGTGACATCGGTTGCTCCCACCACCAGCTGCTCCCGCCCCACCACTTCGCGGGGGTCGGCGGCGGCGGCGGATCCGCCCGCCACAGGGTCGGCAACATCGGCTGCTCCCACCGCCCGCCAAACAGCTACCAAGCTCTGTCCCGCCGCCCCGAGAAGATGAGCAGATACGGAGGGAGAGGGAAAGAGGGGTGGAAGGTAGAGATGGCAACGGGGAATTCACCACCTGGGGTTACATCCGCGTCCACGTCCCCGTCACCGTGGTGTTAAAAATTTCACCCACCCCGTCACCACGCGGTGAATTAATCCCCGTGGTTACTCCCGTAGAGAGAATCAAAGAAGGGACGGCGTGCTGGCGAGTGGCGAGTTGGCGACGGCGTGTGTGGCGCGAGGACAGCCGGAGGCGGCACAAGCTGCAAGAGACGGCTCAAGCCATGTCCCCATCGATCGATCTATCTCGCAGTGAGGCCGAAGCCATGGTTGGCAGATGGCTGGAGGCGCGACGACGACTAGGGGCAGCGGGCGATGCGACGTGGGCTGGAGGCGACGGGCGGCGCGACGAGGGCTGGAGACGGCCGTGCAAGGAGCCGAGGACGGCTGGAGGCGGCACGCTCGTTGATGGACGATGGCCGGAGGCGGCGGACGTCGCGATGATGGCCGGAGGCGTCGGGACCTCGCCCGCGCGAGGAGACGCGGCGACGCACGCGTGTGAGTCTCGAGCGGC

Coding Potentia
Explanation CPC Score
noncoding -1.02365
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0164400.1 2 17461610 G C
Osa02LNT0164400.1 2 17461897 A C
Osa02LNT0164400.1 2 17462019 A G
Osa02LNT0164400.1 2 17462435 G A
Osa02LNT0164400.1 2 17461173 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0164400.1 osa-miR7692-5p Cleavage 4.0 21.288 1 24
Osa02LNT0164400.1 osa-miR1428b Translation 4.5 13.791 1 21
Osa02LNT0164400.1 osa-miR1428c Translation 4.5 13.791 1 21
Osa02LNT0164400.1 osa-miR1428d Translation 4.5 13.791 1 21
Osa02LNT0164400.1 osa-miR1428e-3p Translation 4.5 13.791 1 21
Osa02LNT0164400.1 osa-miR2870 Cleavage 3.0 20.541 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0164400.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0164400.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0164400.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0164400.1 2 qSS-2 Physiological trait Sterility RM301 RM263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus