\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0014000.1

GGGAAGTTTGAAACCAATCAAGAATAGTAACCTGAATAGTGTCAAACCAAGGAAACCAGAACAGAAACCCAACTAGCTATATTAACCTATAATACATCTTAAGAGCAAGTGGAAAATCAGACAATCTAAACAATCTGAACTCTGAAGAAGACTAAAGAACAAGATTAATCAACAAATACCGTGGGCAAGACTGAAGAACTGCCTTCCATAGGTCCATAGGCAAAAGGCGCCGTCGAGCTCCAAAACTCTGGACAGCACCTCCAAAAGAAAAATGCTGTATTGAAGCTCAAGGAGCAAATTTACCGTCTCCTCACTTCCAATTTGAGCATTGACAGCAACAGGAAGCACAACCATTTACAACTTTTTTTCTATTCTTCTAACCTTAAAGCTGGTAGCTGGTCCTGAACAGCTGTCATGCCTGAATGTTCTTCACACGGAAATCATGCCTGAATGTTGTAAGATTTTTAGTGAATTTATCTCTGTTCTTTGGTTCCAAGTTCCTAGCAACATCAGACATCAGCTTCTCGAAGCATTGCGAAAGGCGTTGTTGCTGGTCTACAGGCTGTGATGCTAATATCTGTGCTCTCAAATTACTAAACATCTGTTCACTGATCATTATCAGACTCAGTATTGGCCTACTAAGACTCCATTGATTACCCGCATCCTCAAAGATGATGATCTCAAAAAGCGTCTTCAGTATCTGAGGAAATAAAGTGGGGAACTCTCCAATATGCCGAGCAAGATTTAGTGCAGCTGGTGAAGGAGGGCCATCAGCAGCTGTGATATTGTTGAAATAAAAGGCCGCCAAGCTATCAATGGCAGAGGCACACTGTGTTGATATCCCTGTATCTAGACCTTTTAAGCCAGATTCAAGAGTGCTGACAATATGCACGAAGGTGTTTGTATCCAAATTGAGAACAAAAGTGATATGGCTGCTGAACAGAACTTCAATATATCCATAGAATGCTTTTGACAGCTTTTTGAATGCCAATATGTCAGACAATGGAACTGAGAGGCTCATCTTTAAAGATATATCAAGGGCATCAGCAAGTGCTCTGTCACCATACAGCTCAAATACACCAAAATTGACATAGTTTCCACATAAAGCTCTTGAAAGAACAGCAAGTGATATCCATATGCCTTTGTATTTACTTCCATAAATATCAGTGCCGTTTGGAAGCAACAGAATACGTGATCCATAAGCCACAATCAGCTTGCTAACCTCCTGGAATAAAAGGATCCCATTTGGTGATGATGAATCAAATGTCAATCTCTGAGCTTTGTTCAAAACAAACTCGCACATAAACTTGAGTAGGGGTGTGGTGACCTCCGGCTCATCAGCACAGAGTGAGATGGCTTTCAGTAAAAGTGGCATGCGAGATGGATATAGCCAGTCAAATAGGAGGCCATAGGTCCTGTTTGTGGCCATAGCAATGCCTCGTAAGTCTCTCATCAAACCAATAAATGCGTACTTCACAACATCAGTCCAGAAAGCAGCATCAGCGGTTGCCTCCAAATTAACTGCAACCTATGGAGAATACGAAGAAGAAAACCATATAAGAATGGAGAAAAAACTTAACTAGTACTTCCTACACCCCAAAATGTAGCTATTTCTACCTACGATCTGTACAGGTCCAGATATAGCTACATTCTGGGGCGGAGAGATTATGAA

Coding Potentia
Explanation CPC Score
noncoding -1.22753
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0014000.1 1 9796403 A G
Osa01LNT0014000.1 1 9796744 A C
Osa01LNT0014000.1 1 9797284 G A
Osa01LNT0014000.1 1 9799218 A G
Osa01LNT0014000.1 1 9800011 A G
Osa01LNT0014000.1 1 9796085 C T
Osa01LNT0014000.1 1 9796160 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa01LNT0014000.1 DTM_#DNAt_MULE_japo_Os0284 Chr1 - 9795266 9796380 1114
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0014000.1 osa-miR5832 Cleavage 4.5 14.907 1 21
Osa01LNT0014000.1 osa-miR5516b Cleavage 5.0 20.204 1 21
Osa01LNT0014000.1 osa-miR5516a Cleavage 5.0 20.204 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0014000.1 1 QBphr1 Resistance or Tolerance Insect resistance R210 RZ382
Osa01LNT0014000.1 1 An9 Morphological trait Panicle/flower nan nan
Osa01LNT0014000.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0014000.1 1 nan Morphological trait Root RM7383 RM23
Osa01LNT0014000.1 1 nan Resistance or Tolerance Insect resistance RM576 RM3412
Osa01LNT0014000.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0014000.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0014000.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0014000.1 1 nan Physiological trait Source activity RG532 RM472
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus