>Osa02LNT0165700.1

AGATCAAAGAACACTTTCATACTATATATGAGCTCACATACTGAACAATTCCACATGCACAGCATGTCACATTTAACAAAAAAACAATAAGGATCTCGTTACTGCACAGGTTCAACTAAAACACAGCTCTGTTTAGCTCATTGGCTGTTAACAATCAGCTACTGTCCACTTCTCTCATCATTTACACCATGCGTACTCTTAACTGGTTTAGCTCACGCCCGTCAGAAATCAGCAGCAGGTCACTTCTTCTCCTTATCAATTTACACCATTGTATGCTCAAGTTGTAAGTCAGCATAATACGTGGCAATGAACATCGCTTCAAAAAATTCATCAAGAAGCCCAGAAAATTGTTCGTTGACCATATTCCCGAAATCTTTTTCAGAGAAGAGTAGTTTCCTGCCCTCTACCACCTTCGACATGAAATGCTGATAAGTATTTCTTACCAATCTCAGCAAGGAGAGAACATCATCTCCGTAGATGATTGGTACGCCCGTGATGGGATCTTTCCAGTAAAAGGTCTCAATGAAATAAACGTTGTGAAGATCCATCGGGCTCCAACCAGAGAATATCTTGAGACGTTCAAGCACAAAATTGTATCCTGCTGGGTCTGTTGTTGGCAATACTAGCAGTTTATTGTACAATGATGTAAAGACATGCATCATTTGGTGCTCTTCCATCAAACAGTAGTGATAGCATATCAGATACTGATAAGCAGTTGGATCTCTCATAATCATACTTAGCCATCTGTGAATATCTTCAGGAACTGGTAAAGATTCAAAGAGTTCTTCAATAGTCTTCACATATTGATAAAAGTCAACCTCTGCATTGGCCTTTGTATAGGGGTCTAAATCATCAGCTTGAAACTCATCCATTTCAATGGTCATCTCGTCACTTATCAGAAAATTTCTCAATGAGAATCGACCAGCGAGTGAGTTTGGCTGACTGTGCAACTTGTAAAGGGACCTAACACTTCTTCGTAACACAAGTCGAGTGCTCATTCTTGTGATTTCATATTTCCTTGTCCTTCCGCATCCAGGAGGAATGATAGTATCTGTTAACCTCGTTCTTCTTCTTCTAGTATCAACTAAAGTTGCAAGAGCTGAGGACTTATGATCCTTGCGAAGCGATGATTTTGACATGCTTGCTCTAGGATTTTGATTGGAGCAGCCAGGTCGCTTTCTTTTTCTACCTGAACGCTTTTGATCCTCATGAGGCGGTGATTTTGAGGTGCTTGCTCTAGTATTTTGATTGGAGCGGTCCAGATGCTTTTGTTTTCTATCGAAAATCTTTCTCCTGTCATACGCAAGAATGCTACTTGGGATTGGGAGTAACTTCTCCTCATGTGGATTTGAACTATTAATAGAACTAGGAGGGAGTGGGTAGATGATGTCATAGTGAGACTCTATGCGCAGCAAGGTCACGCAAGGAGCGCCGCGGACAATGTAGTGCGTACTTTCGCAAGTTCCATCATGAACGTTCTCCACTTGGACGGTCACCCTGAGAGCTTCTGCACAAGCTTTTACTGCAGCAGAGGTTGCGTACACACGAGGAGCAATTACGTGCTTCGAGCACCAATCTTCCAGATTCTGATTTTCTCCACAATTAGTTGCACACCATTCATAATTCCATATGCGCGTGCACATCCAGGTAGCTGCTACTAATCTGAGGAAAGCAAAAATGTCATCCGTTGTATCATAACTGCTGAAGAACTCAAGAATCTTCCCCCTGATTATTGATATTGGGTGCTCCTGCATGCGCTTCCATCCCTTTATTTTCTCTATCAGCCTCTCAAATGCAGAATGATGATCATCAATAAAACATGACTAGCATAACTTGTCGGACAAGCTTCCATAGTTAAACATCAAGTATGGAGATAATCATTAGAAAGAACATTTGATGAGATAGTAGTAAGGAAGACATTTGTGATTTAGGATCAAGATGGCCAAACCATGAAGCAGCATGTGTGCAGCATTTCAGTCTTGAACATAAGACACCTATAATATTTGTTCTTCCCCATTATATTTTATCACTATTAATGTCCAACTGCAAAATTTCTTGCAAGGTTGAATATTGTTCAATCAGGAAGTTAACTTCACAAATTTATAATTAGAATTAATGTCAACAGGGTAAAAGACTGCGATGTCATGCCACTATTGTGAAACAATGGTGTGTATCTCCTGCAAATGATAAAACAAAGGAAGTAAAATGATGGATACAGATTGGTTTGTACAATACAAATTTAGATTAGAGGAATCATCCATTACAAGCATGTTTATGTCAGAAAAACCAATATAGGGGAAAAAGCAAATAGGGAAGACAAGAGATTACTTTGTGTTTCTGGGAAAATTCAGAGGCCCATTGAAGATTTTCAGCTTTGGTAGCCAATGCTCTAACAGCAGCAAGAAGGCGGTCTTCCTCACGTGTGCCTATACTATCAACAACTTGCTCCAGGTAGGAAAATATGAAACTCCTATAGAAACATTCCTCATCTCTATGTACTGGCCTAAATTCTGAATAGTGATGGCTGAGATACTTTAAACGCAAACCAACTTCCGGTTGCTGGAAAGAATTATCAATGTTCCTGAAATAATGATTTGCAGCTTCTCCCATGGGAATTTTCTTGTGATACACATGAGCAGGCAGTTTTGATGTGCTTGCCCCGCAATTATGAAACGGGTAGTTCACTGGTTCTCCTTTTCTATCTGAAAGCTTCTCCTCGGCGTCGCCATGATACGCACGAATGCTACTCCTGAGAAGCTTCACTTTGGGGGAATCAGATGTCCTCTCCTCCTTCCTTCGTGCCTGTTCCCGATCATCAGAGACTGTAAAAGATCCTTCTCCGATCTTTCTCTTTCCTTTGCGGTCCACCAATGCAGCGGCGGCGCTCAAACCGTCGATGCCGCGGCCTCCGCCTCCGGGCTGCTCACGGGCCCGCCCCTGGGTGAAGCGCTCGGTGGGCGAGCGAGGAGGCGAGCGCGGCGGCCGCGCCGGCCCAGAGACAACGGCGCCGCCCTGGGCTGCGGTGGCGCGGGAGCTGGACTCCTGGGAGTGGGACTCGCGTCGCCCGCGCCCGGATC

Explanation	CPC Score
noncoding	-1.27747

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0165700.1	2	18502171	A	G
Osa02LNT0165700.1	2	18508006	G	A
Osa02LNT0165700.1	2	18508234	T	G
Osa02LNT0165700.1	2	18508496	A	G
Osa02LNT0165700.1	2	18501752	T	C
Osa02LNT0165700.1	2	18501856	G	C
Osa02LNT0165700.1	2	18503113	T	C
Osa02LNT0165700.1	2	18504407	A	C
Osa02LNT0165700.1	2	18504460	T	A
Osa02LNT0165700.1	2	18505660	G	T
Osa02LNT0165700.1	2	18505968	G	C
Osa02LNT0165700.1	2	18506205	C	T
Osa02LNT0165700.1	2	18507857	G	C
Osa02LNT0165700.1	2	18507562	T	C
Osa02LNT0165700.1	2	18505864	T	C
Osa02LNT0165700.1	2	18506327	G	A
Osa02LNT0165700.1	2	18509632	T	C
Osa02LNT0165700.1	2	18501860	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa02LNT0165700.1	DTM_#DNAt_MULE_japo_Os1513	Chr2	-	18509628	18509717	4

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0165700.1	osa-miR5791	Translation	4.0	19.452	1	21
Osa02LNT0165700.1	osa-miR5816	Translation	4.5	16.031	1	24
Osa02LNT0165700.1	osa-miR5816	Translation	4.5	21.112	1	24
Osa02LNT0165700.1	osa-miR171d-5p	Translation	5.0	23.358	1	21
Osa02LNT0165700.1	osa-miR814a	Translation	5.0	19.501	1	22
Osa02LNT0165700.1	osa-miR814b	Translation	5.0	19.501	1	22
Osa02LNT0165700.1	osa-miR814c	Translation	5.0	19.501	1	22
Osa02LNT0165700.1	osa-miR1865-5p	Cleavage	4.5	12.242	1	24
Osa02LNT0165700.1	osa-miR2099-5p	Translation	4.5	14.584	1	22
Osa02LNT0165700.1	osa-miR2864.1	Translation	3.0	13.284	1	21
Osa02LNT0165700.1	osa-miR2866	Cleavage	4.5	13.347	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0165700.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0165700.1	2	nan	Morphological trait	Root	RG171	RG157
Osa02LNT0165700.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0165700.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0165700.1	2	2-3SY	Physiological trait	Source activity	RG171	RG157

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus