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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa01LNT0014200.1

CTCCAATCCGCTCTCCGGTCTTCCCCCCGTCGCGATAGCGGTTCTGTGAGTAGCGTCGATTTGATCCTGGAGTGTCTCCGGAAACGGGAGAGCGAATCGGGGGATTGCTGTGGGTAGGGTTTGGGACGATTCGCTGAAATGTTGTGGTTTGTGGACACGTTCCCTGCCAGGCTTGGGCTGTCCTAGGGTTTTGCGCAGTTAGATCATCGTGCATTGGTTTGAGTTGAAATGGACCTGCAATGTTCGTTTCAGTGTAGTTTGTGAAATCTAGAGGCTGCCTGGTGTACAGATCGTTTCGTGGATGCTGTCTGATACTTGAACAGGTCCAATGCACGATAGGTGCTGGAAGTATGGAGGGTTAACTGAATTAGTAGATTCGTAGATATTGTTGTTGATCATGCTCTGGGTATAAGGTTTTGAAAGAAGAGATTAGTTCCCCAGAGCTAGAAGTTAAAATCTCCGCGATATGTTAAATTTTGTCATGGATGATTTCAATAGGATGCTAAAGGTTACGTGTGATGATTTGGTGCTCGGAAAGAGGTTGGAAGGAGAGTTTAATCGCTGAAGTTTTTGTTGTCACTGCTGAGAACCACCATGTTCCTATTAGCTTGTGAGGATTTATTTTACGAGGTCTGGTGGGTTTCGAGAGTTCAGAGCAACTCTTGTCTTAACATGGGGCAGAAATAATGATTTGTTTTTTATATTCTCTGTAGTTGTGAGTGTTTATTGATGTTTGTGACAAACTGGTGTTTGATGGCTTATATTCATAGTGAAAATGGAAGAACCAACCTAAAACAGTCATTTAGATACCCAATTGAAGC

Coding Potentia
Explanation CPC Score
noncoding -1.22891
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0014200.1 1 10119707 A T
Osa01LNT0014200.1 1 10120170 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0014200.1 osa-miR1425-5p Cleavage 5.0 24.063 1 21
Osa01LNT0014200.1 osa-miR2101-5p Cleavage 5.0 22.922 1 22
Osa01LNT0014200.1 osa-miR5518 Translation 5.0 18.385 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0014200.1 1 nan Resistance or Tolerance Insect resistance RM576 RM3412
Osa01LNT0014200.1 1 nan Morphological trait Root RM7383 RM23
Osa01LNT0014200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0014200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0014200.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0014200.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0014200.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0014200.1 1 QBphr1 Resistance or Tolerance Insect resistance R210 RZ382
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus