>Osa02LNT0172900.1

GGGGTGGTACACATGTAGCGCATGTGATCATGGCAATGGTGACGCGATGCATGATACAGTGAATGTTGTAGGAGTATATGTGAGCTGCTCCAGAAGAGCTGTGAACCTGGAAAGTGGCGCAGCACGGTGACCACAGCGCATCCAGATGCAGTGGAGACATCCAGAAGCATGTGTAATCCTCTGATATTACGGCATCCGCAACAAGCAAAAAGAGCAGCACCTACAAAAGACATTAATTAATAATACTAGTATTTAGCACAAATATTCCAGCAATGTGAAAAATCTAATGGTACAAAACTTAGTCTTACGGACTACATGGGGTCTCAAAGTCATACAGTCGACCAAAACGCTAGGCTCCTGCTTCAACAATTGTATCAGCAGCGGCGGGGTTTTTCCCGAAGGGTACACAAATGCTTCCGAAGAACATACTCAATCCCTATAGCTTTTCAAGACTCCATAACACAAGCGCTTACAAAAACACACCGAGCCCCCCTAACATTTCCAGCAAATTGGAACTAGGCGGGTTACGCGTTATTTGCGTAGGGGGACTCCTCGCGGTTGGCTGGCTGTGCTGGTGATCTGCTGTAGCTTCGCTCACGAGGAGGTGGAGGTGATCGGCTGTAGCTTCGTGCACGAGCTGGTGGTGGCGACCTGCTGTAGCTGCGCCTCTTTGGAGAACGATCCCGTGGGCTGTAACTCCTTCTACCATAGCTTGGGCTCCTCCGGTATCTTGGGCTGCGGCTGCGACTACGACCGCGGTACCTTGGACTCCGGCTACGGCTGCGGCTGCGGCGTCTTCCACTGCCAAGGCCTCCAGAACCAATCCGTAAGCGGCATTCACGTGCAAAATGACCAGGTTCGCCACATTCATAGCACTTCATGTCAGAACCACCGGAACGATCTCGGCCACGACCACTACCAGCTTTGGTTGACAGCTCAACCCTCCATCCATTCTTGCCATCTAAATCACGAATTGCATCTTCTGCATCCCTGCGGTCATCAAAGTCAATAAAGGCAAAACCTGGTGGTTTTCTAGCAACCCATACACTCCTCAGAACCCCAAACACGCGGAACTCGTCCTCGATCTCCCGCGCCGTCACGCGCGGATCCAGGTTCCCCACGTACACGCGAGCCATGAGCGCGCTCGACCCTTTGCGGGCGCGTCCGCCTTGGGGGGGATTTGGGTTTCGGGGTAGGCGAGGAGGAGGAGGAGGAGCGGCTCTAGGGTTTTAAGCTCGAGCCGTCGAGCGAGCGGAAGAG

Explanation	CPC Score
noncoding (weak)	-0.857539

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0172900.1	2	23992300	A	G
Osa02LNT0172900.1	2	23992647	A	G
Osa02LNT0172900.1	2	23992691	C	G
Osa02LNT0172900.1	2	23993028	C	T
Osa02LNT0172900.1	2	23993561	A	C
Osa02LNT0172900.1	2	23992546	G	T
Osa02LNT0172900.1	2	23993917	T	C
Osa02LNT0172900.1	2	23994149	T	C
Osa02LNT0172900.1	2	23994324	A	G
Osa02LNT0172900.1	2	23994985	G	A
Osa02LNT0172900.1	2	23995046	T	G
Osa02LNT0172900.1	2	23995142	G	A
Osa02LNT0172900.1	2	23995320	C	T
Osa02LNT0172900.1	2	23995751	G	A
Osa02LNT0172900.1	2	23995807	C	T
Osa02LNT0172900.1	2	23995891	A	T
Osa02LNT0172900.1	2	23996134	C	A
Osa02LNT0172900.1	2	23996146	A	C
Osa02LNT0172900.1	2	23996148	C	A
Osa02LNT0172900.1	2	23992498	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0172900.1	osa-miR5795	Translation	4.0	18.963	1	22
Osa02LNT0172900.1	osa-miR417	Cleavage	4.0	15.404	1	21
Osa02LNT0172900.1	osa-miR816	Translation	5.0	14.665	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0172900.1	2	qRTT2-1	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0172900.1	2	nan	Others	Others	C424	G45
Osa02LNT0172900.1	2	nan	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0172900.1	2	qPTD-2	Morphological trait	Panicle/flower	C424	G45
Osa02LNT0172900.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0172900.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0172900.1	2	qPN2	Morphological trait	Culm/leaf	RZ961	RZ401
Osa02LNT0172900.1	2	nan	Resistance or Tolerance	Insect resistance	RG157	RZ318
Osa02LNT0172900.1	2	yld2.1	Morphological trait	Seed	RM262	RM263
Osa02LNT0172900.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0172900.1	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273
Osa02LNT0172900.1	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0172900.1	2	qCSH2	Resistance or Tolerance	Cold tolerance	RM262	RM263
Osa02LNT0172900.1	2	Tiller number	Morphological trait	Culm/leaf	R26	C424
Osa02LNT0172900.1	2	qRPA-2-c	Resistance or Tolerance	Other soil stress tolerance	C424	G45
Osa02LNT0172900.1	2	Sn2a	Morphological trait	Dwarf	C424	G45

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus