\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa01LNT0014400.1

GGCCATGGCCATTGACGATTGTGCCGAACAGAGTTGGTGTTTCTTGGTCACCAAAAAACACCTGCTGTTTTTTTGGATCTGATCTTGCAACCTTCAAGGAGATCGCCAAGAAAAATCATGCTTCTGCGGAGTCTTGTTTAACTCTGCTCTTCCATGCATCAGCCTGGCAGGATGAGATTTGAGTTCCAGGGTGCATCTTTCTGATGTGTTCATCCTTTCTTGAACAGTTCCCCCTTCGGTAGTTCCTTGCATGGTAGAAAATAAAATCTCCAAGGGAAAATAAGAGCAAACACATGAGAGACACTTGCAGGAGCCTTACTACCGGCGGCTATGAAGAAGCTGCTGAATGAAGGGCGACGAGGGAGGCGTAGGCGCCATCCTTGATGTTCATCAAGACAAACGGTGAGCAACGATCACGGTTGTCCGGTTGACCATCACTCTGTCCAGCGCGTCTTGAACCACCCTTTCGGATTCAGCATCCAGCGCACTGGTTG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.969058
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa01LNT0014400.1 1 10515376 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa01LNT0014400.1 osa-miR5821 Translation 3.5 14.698 1 21
Osa01LNT0014400.1 osa-miR7692-5p Cleavage 3.5 22.391 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa01LNT0014400.1 1 nan Resistance or Tolerance Insect resistance RM576 RM3412
Osa01LNT0014400.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0014400.1 1 nan Resistance or Tolerance Salinity tolerance RM1 R886
Osa01LNT0014400.1 1 nan Resistance or Tolerance Salinity tolerance RM1 RM5
Osa01LNT0014400.1 1 QBphr1 Resistance or Tolerance Insect resistance R210 RZ382
Osa01LNT0014400.1 1 rfw1b Resistance or Tolerance Drought tolerance C813 C955
Osa01LNT0014400.1 1 nan Physiological trait Source activity RG532 RM472
Osa01LNT0014400.1 1 nan Morphological trait Root RM7383 RM23
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus