>Osa02LNT0174300.1

CTCCACGCTACAGGAGTTCATCATAAGAGAACTTCGTACCGTTCACAACGGTACCAGTCATTAGAATATTTACACCTAAATTTCCATTACAAATTGGGACGAGCCATACTACCCTAGAACAATCACTAGGCCAAACGTGACAAGCGCACCGCCGGGCGCTGAAGGCTTTAACGTCGTTTATTGCAGGAGCAACAAAGGACTCATGTGCAACATGACACTAGGGATCACTCTCTAGAGAGTGAATTTACTTCACTTGTGTAGAATGCTTTTTTTCTGCGCTTTGAACTTCTTCTGTGGTTGAGTCTTCGGCTTCTGTAATGCCTCGTAGTCGATTCTGTTCTTCCATGTGCTCTTGCGTAGTTTGATTGGCCTGTTTCCAACATATTTACCATTCATCTCTTTCAATGCTGCAGCAAGATCCGACGCATTAGCAAAACTAACAAAGGCATAGCCCCTAGTTTTACCAGTCCATTTGTCCCTAATAACCCTAGCCATGTTGAAGGATGGATATTTTGAAAATGCCTTTGTAAGAACATCATCGTTCACTTCGTTTCCAAGATCGCCACAAAACAACCGAAAATCATCTAATTCCACGAGACAGGCATCAACTCTGAAACCTGTTGGGCTACATATCACATCCTCGGCCACCTTTAACAGAAGGAAACAGGGGAAAGTTTGTCTTATTAGAATACATAGATCGAACATTAGATCTTGCCTGGGGAATTGAAGGTGTTTGATGGTTTGTTGACGTGAGGATAACAGACATTCAGACAAGTTCAGACGAGGGGAAAGTCACATTTCGGGCCAGTCAGCCAAAGTTGGATCCTCCCAAGATTGCCCAGCTGCCTTTCGAGGTACTGCCTTTTTGTTTGCTTCAATCTTCTTGTCTTTCTCACTATTTGCAATAGCAGCTTTCACAGTAGCTAGAGCTTCAGGAGTGATTATCTGTGAATCTTTCTGGAACAGTTGCTGAACCTGCTGGACTTGGGGCATGGGGTAGACGGCGTTGTACGCCGCGGGCGCCGCTGGCCAGGTGGCGGGCTGCTGCACGTTCTGGAGGTGGAACGGGACGGGGAAGTAGGACGGGACCGCCGCCGCCGCGGCAGCCGGGTACGAGTACTGCGCGGACGCGGCCGCCGCGGCGGGCGAGATGGACTGCGTCGACATCGCCGGCGAGGCAACCAACCAGAGTGCGGAGGCGCGGCGCGGGAGGGGGCGATCGTACGGGCTCACGCGGCGTCGCGTGCGATGTGTTTGTTGATCTCAACGGCCCGCGCGTCTGGTCGCGGATTGCAGGTGGCGTGAGCGCGAATCGGTTGGGTTGCCGGGGGAAGCAGAGGCTGTGTATTGTGATGATGCGCCGCGTGGTGGTAGGGGGGAATGGTGTGGAATTCTCTCGAAGCTCCTGGGCGTTACTGGCG

Explanation	CPC Score
noncoding	-1.23078

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0174300.1	2	24783556	C	T
Osa02LNT0174300.1	2	24784257	T	C
Osa02LNT0174300.1	2	24784326	G	A
Osa02LNT0174300.1	2	24784437	T	A
Osa02LNT0174300.1	2	24784565	T	G
Osa02LNT0174300.1	2	24784595	T	C
Osa02LNT0174300.1	2	24784599	C	T
Osa02LNT0174300.1	2	24784790	T	A
Osa02LNT0174300.1	2	24785023	T	C
Osa02LNT0174300.1	2	24783841	C	G
Osa02LNT0174300.1	2	24785100	G	A
Osa02LNT0174300.1	2	24785655	T	G
Osa02LNT0174300.1	2	24785993	A	C
Osa02LNT0174300.1	2	24786086	A	T
Osa02LNT0174300.1	2	24786457	A	C
Osa02LNT0174300.1	2	24786503	C	T
Osa02LNT0174300.1	2	24783588	G	A
Osa02LNT0174300.1	2	24786445	A	G
Osa02LNT0174300.1	2	24786509	C	T
Osa02LNT0174300.1	2	24783895	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0174300.1	osa-miR419	Translation	4.5	11.364	1	21
Osa02LNT0174300.1	osa-miR1853-3p	Cleavage	5.0	12.187	1	22
Osa02LNT0174300.1	osa-miR1857-3p	Cleavage	5.0	22.386	1	21
Osa02LNT0174300.1	osa-miR1435	Translation	5.0	19.066	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0174300.1	2	qRPA-2-c	Resistance or Tolerance	Other soil stress tolerance	C424	G45
Osa02LNT0174300.1	2	Tiller number	Morphological trait	Culm/leaf	R26	C424
Osa02LNT0174300.1	2	Sn2a	Morphological trait	Dwarf	C424	G45
Osa02LNT0174300.1	2	qRTT2-1	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0174300.1	2	nan	Others	Others	C424	G45
Osa02LNT0174300.1	2	nan	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0174300.1	2	qPTD-2	Morphological trait	Panicle/flower	C424	G45
Osa02LNT0174300.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0174300.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0174300.1	2	qPN2	Morphological trait	Culm/leaf	RZ961	RZ401
Osa02LNT0174300.1	2	nan	Resistance or Tolerance	Insect resistance	RG157	RZ318
Osa02LNT0174300.1	2	yld2.1	Morphological trait	Seed	RM262	RM263
Osa02LNT0174300.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0174300.1	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273
Osa02LNT0174300.1	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0174300.1	2	qCSH2	Resistance or Tolerance	Cold tolerance	RM262	RM263

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus